Corallococcus coralloides: COCOR_06344
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Entry
COCOR_06344 CDS
T01780
Symbol
dnaE1
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
ccx
Corallococcus coralloides
Pathway
ccx03030
DNA replication
ccx03430
Mismatch repair
ccx03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ccx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
COCOR_06344 (dnaE1)
03430 Mismatch repair
COCOR_06344 (dnaE1)
03440 Homologous recombination
COCOR_06344 (dnaE1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ccx03032
]
COCOR_06344 (dnaE1)
03400 DNA repair and recombination proteins [BR:
ccx03400
]
COCOR_06344 (dnaE1)
Enzymes [BR:
ccx01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
COCOR_06344 (dnaE1)
DNA replication proteins [BR:
ccx03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
COCOR_06344 (dnaE1)
DNA repair and recombination proteins [BR:
ccx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
COCOR_06344 (dnaE1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DUF655
Motif
Other DBs
NCBI-ProteinID:
AFE08602
UniProt:
H8MRG3
LinkDB
All DBs
Position
complement(7993632..7997177)
Genome browser
AA seq
1181 aa
AA seq
DB search
MSFTHLHLHTLYSLLDGAIRMKDLIKTVKEKGMSSVAVTDHGNMFGTIDFYKKAKDAGIK
PILGLEAYVAGPKGREDRSEKVAHHLILLAKNAEGYANLRYLSSTAYMNGFYYHPRIDKQ
VLAEHSKGLVGLTACLGGEVTSACFRGDMDHARRVAAEYKGIFEPDSFYLEVQSNGMVEQ
DKANENLKQLSRDLDIPLVATADAHYIKREDAKAHELLMCIASGKTLADNKRLRHSTDKL
YVTSPEEMLGFFSDSPEAVHNSMRIAEMCNVELKLGKPMLPTFKVPDGHTPDTFMSELAY
EGLRQRFKELEGQYPIDREQYQARLTLELGVIQRMGFSGYFLIVQDFINWAKDHNIPVGP
GRGSGAGSLVAYALRITDLDPIPYNLLFERFLNPERVSMPDFDIDFCQDRRDEVIKYVGR
KYGEMNVGQIITFGSLKAKSVLRDVCRVFGLPFSEGDRIAKLVPEVLNITLKEAIEMEPR
LKEMIEKPQNIGEVEGNPVTTKDVLEIALALEGLHRQPGMHAAGVVIADKPLWEFVPVYQ
PPGEKILITQFAKDEVEAAGLVKFDFLGLKTLTVIQHALDLVNRNHGKDIKRHEIPLDDE
KMWKLMAEGDTAGVFQMESSGFTEMVMKLKPTCFEDVIAAGALYRPGPLDSGMVDVFINR
KHGREKVAYPHPKLEPVLKDTYGVIVYQEQVMQISQVLGGYTLGRADLLRRAMGKKKAEV
MQAERAGFLEGCKTNNVDLKVAGEIFDLMEKFAEYGFNKSHSAAYGLVTIHTAWLKAHYP
CEFMAALLTSEKDNTDKVVKHIGEARESGTQVLPPDVNQSDMAFGAVEGKIRFGLGAIKG
VGEGAIESILEARKEGPFKSLFDFCERVDGRRVNRKVLEALVKAGAFDFEKRPRAQLFET
IERAMNRGSSSQKDKAAGQSSLFGMLAGPASSGTGLKDDYAAVEEWPEKERLAFEKEAIG
FYVSGHPLYQYEKELKRYARPITAVQRARRDEKLTVAGIITVLRERPTKTGKRMAWVTIE
DLSGSTELVCFPGKDGTRNVMGKDGKWSKQGPKPGYEHWEHLLKSDDPILVTGTVQISQR
DENTPTAELIVEDIQSLKAVREKRTKRLELRLPADVVTEERLAKLNELAKKYAGATPVAV
SVLFPGEAEAHISGTTLKVQVNDDLLLAVDRLFGQKVVEFG
NT seq
3546 nt
NT seq
+upstream
nt +downstream
nt
atgtcctttacccaccttcacctccacaccctctattcgctgctggatggggccatccgg
atgaaggacctcatcaagacggtgaaggagaagggcatgtcgagcgtggccgtgacggac
cacggcaacatgttcggcaccatcgacttctacaagaaggccaaggacgccggcatcaag
cccatcctcggcctggaggcctacgtcgccggccccaaggggcgcgaggaccgttcggag
aaggtggcccaccacctcatcctcctggccaagaacgcggagggctacgcgaacctgcgc
tacctgtcctccaccgcgtacatgaacgggttctactaccacccgcgcatcgacaagcag
gtgctcgcggagcacagcaagggcctggtcggcctcaccgcgtgcctgggcggtgaagtc
acgagcgcgtgcttccgcggtgacatggaccacgcccgccgcgtggccgccgaatacaag
ggcatcttcgagcccgacagcttctacctggaggtccagtccaacggcatggtcgagcag
gacaaggccaacgagaacttgaagcagctgtctcgtgacctggacatcccgctcgtcgcc
accgcggacgcgcactacatcaagcgcgaggacgccaaggcgcacgagctgctcatgtgc
atcgccagcggcaagacgctggcggacaacaagcgcctgcgccactccaccgacaagctc
tacgtcacgagcccggaggagatgctcggcttcttctccgactcgccggaggccgtgcac
aacagcatgcgcatcgcggagatgtgcaacgtggagctgaagctgggcaagcccatgctc
cccacgttcaaggtgccggatggccacaccccggacaccttcatgtcggagctggcctac
gagggcctgcgccagcgcttcaaggaactggaaggccagtaccccatcgaccgcgagcag
taccaggcgcgcctcacgctggagctgggcgtcatccagcgcatgggcttcagcggctac
ttcctcatcgtccaggacttcatcaactgggccaaggaccacaacatcccggtgggcccg
ggccgtggctccggcgccggttcgctcgtcgcctacgcgctgcgcatcaccgacctggac
cccatcccgtacaacctcctcttcgagcgcttcctcaacccggagcgcgtgtcgatgccg
gacttcgatatcgacttctgccaggaccggcgcgacgaggtcatcaagtacgtgggccgc
aagtacggcgagatgaacgtggggcagatcatcacgttcggctcgctcaaggccaagagc
gtgctgcgcgacgtgtgccgcgtcttcggcctgcccttcagcgaaggcgaccgcatcgcc
aagctggtgcccgaagtcctcaacatcaccttgaaggaggccatcgagatggagcctcgc
ctcaaggagatgatcgaaaagccccagaacatcggtgaggtggagggcaaccccgtcacc
accaaggacgtgctcgaaatcgcgctcgcgctggagggcctgcaccgccagcccggcatg
cacgccgcgggcgtggtcatcgcggacaagccgctctgggagttcgtgcccgtctaccag
ccgcccggcgaaaagatcctcatcacccagttcgccaaggacgaggtggaggccgcgggt
ctggtgaagttcgacttcctcggcctgaagacgctcacggtcatccagcacgcgctggac
ctggtgaaccgcaaccacggcaaggacatcaagcggcacgaaatcccgctggatgacgag
aagatgtggaagctgatggcggagggcgacaccgccggcgtcttccagatggagtccagc
ggcttcaccgaaatggtgatgaagctcaagccgacctgcttcgaagacgtcatcgccgcc
ggcgcgctctaccgcccgggtccgctggactccggcatggtggacgtcttcatcaaccgc
aagcacggccgggagaaggtggcctacccgcacccgaagctggagccggtgctcaaggac
acctacggcgtcatcgtctaccaggaacaggtgatgcagatctcccaggtgctgggaggc
tacaccctgggccgcgccgaccttcttcgccgcgccatgggcaagaagaaggcggaggtc
atgcaggccgagcgcgccggcttcctggagggctgcaagaccaacaacgtggacctgaag
gtcgcgggcgaaatcttcgacctgatggagaagttcgccgagtacggcttcaacaagagc
cactccgcggcgtacggcctggtcaccatccacacggcgtggctcaaggcccactacccg
tgcgaattcatggccgcccttctcaccagcgagaaggacaacaccgacaaggtggtgaag
cacattggcgaggcccgcgagtcgggcacgcaggtgctgccgccggacgtgaaccagtcc
gacatggccttcggcgcggtggaggggaagatccgcttcggtctgggcgccatcaagggc
gtgggcgagggcgccatcgagtccatcctggaggcgcgcaaggaaggccccttcaagagc
ctcttcgacttctgcgagcgcgtggacggccgccgcgtcaaccgcaaggtgctggaagcg
ctggtcaaggccggcgccttcgacttcgagaagcgcccccgcgcgcagctcttcgagacg
attgaacgcgcgatgaaccgcggctcgtccagccagaaggacaaggccgccggtcagagc
tcgctgttcggcatgctcgcgggccccgcgtcctccggcaccggcctcaaggacgactac
gcggcggtggaggagtggccggagaaggagcgcctggccttcgagaaggaggccatcggc
ttctacgtgtccggccacccgctgtaccagtacgagaaggagctcaagcgctacgcgcgg
cccatcaccgccgtgcagcgcgcgcgccgcgacgagaagctcaccgtggcgggcatcatc
accgtgctgcgcgagcgccccacgaagacgggcaagcgcatggcgtgggtcacgattgaa
gacctgtccggctccacggagctggtgtgcttcccgggcaaggacggcacgcgcaacgtg
atgggcaaggacggcaagtggtccaagcagggccccaagccgggctacgagcactgggag
cacctgctcaagtcggacgaccccatcctcgtcaccggcaccgtgcagatctcccagcgc
gacgagaacacgcccaccgcggagctcatcgtcgaggacatccagagcctcaaggccgtg
cgtgagaagcgcaccaagcgcctggagctgcggctgcccgcggacgtcgtcacggaggag
cggctggcgaagctcaacgaactggcgaagaagtacgcgggcgcgacgccagtggcggtg
agcgtgctgttccccggggaggcggaggcgcacatctccggcaccaccctcaaggtgcag
gtgaacgacgatttgctcctcgcggtggaccgcctcttcgggcagaaggtcgtggagttc
ggctga
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