Corallococcus coralloides: COCOR_07765
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Entry
COCOR_07765 CDS
T01780
Name
(GenBank) hypothetical protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
ccx
Corallococcus coralloides
Brite
KEGG Orthology (KO) [BR:
ccx00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ccx03016
]
COCOR_07765
Enzymes [BR:
ccx01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
COCOR_07765
Transfer RNA biogenesis [BR:
ccx03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
COCOR_07765
Prokaryotic type
tRNA splicing ligases
COCOR_07765
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
AFE07730
UniProt:
H8MTB7
LinkDB
All DBs
Position
complement(9695616..9696773)
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AA seq
385 aa
AA seq
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MMPRVLEVPPGAVPLLAWARTVPPAALKQLQHLAAQPYVTEHVAVMPDVHLASGVAVGTV
FATQAHVVPGALGNDLGCGVSAHRFAFPAASLSRADLERLLSQLARVIPVGDAVHRGRGL
PLPPGLEAPPLSTQKLAHAWERLAPRHLGTLGGGNHFLELDRDGAGDLWLLIHSGSRGVG
GAVGEHHQRVAQALGQGTPPALDTGTEAGRACVNDLDLACRFARANRDQLAVRALAVLAD
VLGVAPDPDRTVDVHHNHVASETHFGRALWVHRKGAVGLDAGARGLIPGSMGTASYVVEG
RGEPRAFRSCSHGAGRVLTRTEARARIRPDALVHALRRVVFDPGRTHALVEEAPAAYRDL
TEVLEDEEDLVTPRVRLTPLAVLKG
NT seq
1158 nt
NT seq
+upstream
nt +downstream
nt
atgatgccccgcgtcctcgaagtcccaccgggcgcggtgcccctccttgcgtgggcacgc
acggtgccccccgcggccctgaagcagctccagcatctcgccgcgcagccctacgtcacg
gagcacgtggcggtgatgccggacgtgcacctcgcgtcgggcgtggcggtgggcaccgtc
ttcgccacgcaagcccacgtcgtccccggcgcgctgggcaacgacctggggtgcggcgtg
agcgcgcaccgcttcgccttccccgccgcttcgctctcgcgcgcggacctggagcggctc
ctgtcccagctcgcccgggtcatcccggtgggggacgcggtgcaccggggacggggtctg
cccctgccgccggggctcgaagctccaccactgtccacccagaagctcgcgcatgcctgg
gagcggctggcgccgcgccacctgggcacgctcggcggaggcaaccacttcctggagctg
gatcgcgatggggcaggggacctgtggctgctcatccactccggctcacggggcgtgggg
ggcgccgtgggggagcaccaccagcgcgtggcccaggcgctcggccagggcacgccgccc
gcgctcgacaccggcaccgaagcgggccgggcctgcgtgaatgacctggacctggcgtgc
cgcttcgcccgtgcgaaccgcgaccagctcgccgtccgggccctggcggtgctggcggac
gtgctgggcgtggccccggatccggaccgcaccgtggacgtgcaccacaaccacgtcgcc
tccgagacgcacttcggccgcgcgctctgggtccaccgcaagggcgcggtggggctggat
gccggagcccgggggctcatccccggctccatgggcacggcctcctacgtcgtcgaaggg
cggggggagccccgcgccttccgctcctgctcgcacggcgcgggccgcgtgctcacccgc
acggaggcccgcgcccgcatccgcccggacgccctggtccacgccctgcgccgcgtggtg
ttcgacccgggccggacgcacgccctggtggaggaggcccctgccgcctaccgggacctc
accgaggtgctggaggacgaggaggacctcgtgacgccccgcgtccggctcacgcccctg
gccgtgctgaagggctga
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