Campylobacter coli RM4661: YSS_05400
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Entry
YSS_05400 CDS
T03166
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
ccy
Campylobacter coli RM4661
Pathway
ccy02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
ccy00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
YSS_05400
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccy03021
]
YSS_05400
Transcription machinery [BR:
ccy03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
YSS_05400
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_ner
Sigma70_r4_2
MCR_beta_N
Motif
Other DBs
NCBI-ProteinID:
AHK76953
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Position
996215..998080
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AA seq
621 aa
AA seq
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MNAKTQDMELEELFKENEKDYITYEKLVKYFSKQPNSATAKKVQTLMKKYKVQLFSAAEI
AQMKNIEDAKRLQEEKQKLQDTSLENEFDLANENDLLEWSRSDSPVRMYLREMGQIALLN
KDEEIEISKKIELGEDIIIDAFCSVPYLIDFILDYREPLINRERRVKELFKSFDDEEKND
DKLDELEDEDEENDEELENEEETPKKTSKKEDERTLKVIEKFKALEKAKKDWLKVSKDKE
SGDEILDKLGIAFKKNILKEKLMDLGPTSKLISEIVKSMETALKSDEEFDKELKRLEYRL
PMFSEELKNRHANILKDITKLSKEEITERALETTMVSTYMEIKKLFQTKEASEKSFDLEK
ERLKEILEQIKRGKKISDEAKTRMAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKA
VDKFEYKRGYKFSTYATWWIRQAISRAIADQARTIRIPIHMIETINQINKIIREHLQKDG
KEPDVSVIAKEVGLSVDKVKQVIKITKEPISLEAPIGSEDDGKFGDFVEDRNSLSPMDHI
LKDDLKEQIDEVLDQLNDREKAVIRMRFGLMDDESDRTLEEIGKELNVTRERVRQIESSA
IKKLKHPKVGRKLKNYIEGWK
NT seq
1866 nt
NT seq
+upstream
nt +downstream
nt
atgaatgccaaaacccaagatatggaacttgaagagctctttaaagaaaacgaaaaagat
tatatcacttacgaaaaattagtaaaatacttcagcaagcaacctaattcagccactgcc
aaaaaagtccaaactttaatgaaaaagtataaagtacagttattttcggctgctgaaatt
gcacaaatgaaaaatatagaagatgcaaaaagattgcaagaagaaaaacaaaaattgcaa
gatactagtcttgagaatgaatttgatttagccaatgaaaatgatttgctagaatggagc
agatcggattctcctgtgcgtatgtatctaagggaaatggggcaaattgcacttttaaat
aaagatgaagaaatcgaaatttccaaaaaaattgaacttggtgaagatattatcatagat
gctttttgttccgtgccttatttgattgactttattttagattatcgtgaaccactgatc
aatagagaaagaagagtaaaagaacttttcaaaagctttgatgatgaagaaaaaaatgat
gataagcttgatgaactagaggacgaggatgaagaaaacgatgaagaattagaaaatgaa
gaagaaactcctaaaaaaacaagcaaaaaagaagatgaaagaactttaaaagtcatagaa
aaatttaaagctttagagaaagcaaaaaaagattggctaaaagtttctaaagataaagaa
agtggagatgaaattttagacaaacttggaattgcttttaagaaaaatattctaaaagaa
aagctgatggatctaggtccaacttctaaactcatcagtgaaattgtaaaatcaatggaa
actgccttaaaaagtgatgaggaattcgataaagaattaaaacgcctagaataccgcttg
ccaatgttttctgaagaattaaaaaatcgtcatgctaatatcttaaaagatattacaaaa
ttaagcaaggaagaaattaccgaaagagcgcttgaaacgactatggtaagcacttacatg
gagataaaaaaactttttcaaaccaaagaagcaagcgagaaaagctttgacttagaaaaa
gagcgcttgaaagaaattttagagcaaatcaaacgaggtaaaaaaatttctgatgaagct
aaaactagaatggctaaatcaaatttgcgtcttgttgtaagtattgctaagcgttataca
aaccgtggtttaccttttttagatcttatccaagaaggcaatataggtcttatgaaagca
gtggataaatttgagtacaaaagaggatataaattttcaacctatgcaacttggtggata
agacaagctatttcaagagcgatcgcagaccaagctagaactataagaatacctattcat
atgatagaaaccatcaatcaaatcaataaaattatacgcgagcatttgcaaaaagacgga
aaagagcctgatgtaagtgttatagccaaagaagtgggactgagtgtggataaggttaag
caagtgattaaaatcacaaaagaacctatttcacttgaggcgcctattggtagtgaagat
gatggcaaatttggggattttgtagaagatagaaattcactctcgcctatggatcacatt
ttaaaagatgatttaaaagagcaaattgatgaagttcttgatcaactaaacgatagggaa
aaagcagttattcgtatgcgttttggtctaatggacgatgaaagcgatagaaccttggaa
gaaataggcaaagaattaaatgttacacgcgaaagagtaagacaaatagaaagctctgca
attaaaaaactcaaacatccaaaagtgggtagaaaactcaaaaactatatcgagggttgg
aagtaa
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