Campylobacter coli RM4661: YSS_05980
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Entry
YSS_05980 CDS
T03166
Name
(GenBank) ATP-dependent DNA helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
ccy
Campylobacter coli RM4661
Pathway
ccy03420
Nucleotide excision repair
ccy03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ccy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
YSS_05980
03430 Mismatch repair
YSS_05980
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ccy03400
]
YSS_05980
Enzymes [BR:
ccy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
YSS_05980
DNA repair and recombination proteins [BR:
ccy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
YSS_05980
MMR (mismatch excision repair)
Other MMR factors
YSS_05980
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
Viral_helicase1
PcrA_UvrD_tudor
AAA_30
NopRA1
CarD_TRCF_RID
DUF3553
Motif
Other DBs
NCBI-ProteinID:
AHK77059
LinkDB
All DBs
Position
1113744..1115804
Genome browser
AA seq
686 aa
AA seq
DB search
MNLFTGLNESQKEAASHIDGPMLILAGAGSGKTKTITTRLAYMIGEVGIPAINTLTLTFT
NKAASVMKNRALSLLNSSENPLLCTFHKFGLLFLKLHIERLGRKNNFIIIDNDDSKKILK
ELINDDKTSPHQILQFISHFKNESKSVQDVFNDLELLKDNEIKHQALQKIAIYYQNYQEY
LLKHNFVDFDDLLLLTNILLENDQNFAKEQSSFYRYITVDEYQDTNALQYKILKNLCCVH
ENICVVGDDDQSIYSWRGAKIENILNFQSEFSNVKLVKLEQNYRSVGMILKAANNLISHN
KKRLGKTLLCTKDEGEDIQILSSDNEKIESALVAKKIKELLNSGIYAGEIAVLFRINALS
RSIEEAFMKEKIPYKLLSGMRFYERLEIKDLICYLRILINPNDDLSFKRIINRPKRSIGE
KALQNLEDYAQKRKISLFEALCESDGGVGIFSLKKAQNEAKKFIQNIYKLREYSDLKKMI
ENFEELFAFKEFYALQEDGDERVLNIDEFYASIKEKIKEEPQTTLEDILSEISLLSDQDG
IEGECVYLMSVHTSKGLEFDHVFIVGLEEGFFPLNESDIEEERRLAYVAITRAKKCLSLS
IAKSRFYRGSRTELDSSRFLEESQLTKKISINKTEQGYHKGDLVKHKIFGIGRVISVNKS
AKEEKLTINFGGIERIIMASFVEKAV
NT seq
2061 nt
NT seq
+upstream
nt +downstream
nt
atgaatttatttacaggtttaaacgaaagtcaaaaagaggctgcaagtcatatcgatggc
cctatgcttatactagcaggtgcgggtagtggaaaaaccaaaacaattacaacgcgtctt
gcctatatgattggggaagttggaattcctgctatcaataccctaaccctaacctttaca
aacaaggctgcaagtgtgatgaaaaatagagccttaagccttcttaatagcagtgaaaat
cctttactttgcacttttcataaatttggcttattgtttttaaaactccatatagaaaga
ttaggaagaaaaaataattttattatcatcgataatgatgattctaaaaaaattttaaaa
gaactcattaatgatgataaaactagccctcatcaaattcttcagtttatctcgcacttt
aaaaatgaaagtaaaagtgttcaagatgtatttaatgatctggaattgttaaaagataat
gaaatcaaacaccaagccttgcaaaaaattgctatttattatcaaaactatcaagaatat
ttactcaagcacaatttcgtagattttgatgatcttttacttttgaccaatattcttttg
gaaaatgatcaaaatttcgccaaagagcaaagctctttttatcgttatatcacagtcgat
gaatatcaagataccaatgctttacaatacaaaattcttaaaaatctttgctgcgttcat
gaaaatatatgcgttgtaggggatgatgatcaaagcatttatagttggcgtggtgcaaag
atagaaaatattttaaatttccaaagtgaattttcaaatgtaaaacttgttaaattagag
caaaattatcgttctgtgggtatgattttaaaagctgctaataacctaatatcgcacaat
aaaaaacgtcttggaaaaaccctactttgcacaaaagatgagggtgaagatattcaaatt
ctaagttcggataatgaaaaaatcgaaagtgcattggtggctaaaaaaatcaaagagctt
ttaaattcgggcatttatgctggagaaattgctgttttatttcgtatcaatgctctttca
agatccatagaagaagcctttatgaaggaaaaaattccttataaattgctaagtggaatg
cgtttttatgaaagacttgaaattaaagacctcatttgctatcttagaattttaatcaac
cccaatgatgatttatcctttaaacgcattatcaatagacctaaaagaagcataggcgaa
aaagctttacaaaatttagaagattatgcacaaaaaagaaaaatttcactctttgaagca
ttgtgcgaaagcgatgggggtgtgggaattttttctcttaaaaaagcacaaaatgaagca
aaaaaattcatacaaaatatttataaacttagagaatattctgatttaaaaaaaatgatt
gaaaattttgaagaactttttgcttttaaagaattttacgctcttcaagaagatggtgat
gaacgcgtattaaatatcgatgaattttatgcaagtattaaagaaaaaataaaagaagag
cctcaaacaactctagaagatattttaagtgaaatttcactgctaagtgatcaagatggg
attgagggagaatgtgtatatcttatgagtgtgcatacaagcaagggtttggaatttgat
catgtatttatcgtaggacttgaagaaggattttttcctttaaatgaaagtgatatagaa
gaagaaagacgccttgcttatgtggctatcactcgtgctaaaaaatgtctatcgctaagc
attgcaaaatctcgtttttaccgaggaagtcgcacggaattagactctagtcgtttttta
gaagaaagtcaattaacaaaaaaaatctctataaacaaaaccgaacaaggatatcataaa
ggagatctagtcaaacataaaatttttggcataggacgcgttattagtgtcaataaaagc
gcaaaagaagaaaaacttaccataaattttggcggaatagaacgcattattatggcaagt
tttgtggaaaaagccgtatga
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