Campylobacter coli RM4661: YSS_06240
Help
Entry
YSS_06240 CDS
T03166
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
ccy
Campylobacter coli RM4661
Pathway
ccy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
YSS_06240
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccy03021
]
YSS_06240
03019 Messenger RNA biogenesis [BR:
ccy03019
]
YSS_06240
Transcription machinery [BR:
ccy03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
YSS_06240
Messenger RNA biogenesis [BR:
ccy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
YSS_06240
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
AAA_25
Spore_III_AA
Mor
ATPase_2
AAA
OB_RNB
OB_RNR_1st
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AHK77109
LinkDB
All DBs
Position
1165114..1166445
Genome browser
AA seq
443 aa
AA seq
DB search
MLQNYCFLARTYGKRKKQHQRTHIPVEGYKIEDLKLLDLENLVKIANECEIENPREFRRQ
ELIFEILKAQTKKGGFILFTGILEISSEGYGFLRGMDSNLSDSVNDAYVSNSQIRKFALR
VGDIVTGQVREPKDQEKYYALLKIEAINYLPLQEAKERPLFDNLTPIFPTEKIKLEYDAM
KLTGRILDLFTPIGKGQRGLIVAPPRTGKTELMKELASAIAKNHPEMHLIVLLVDERPEE
VTDMQRCVKGEVFSSTFDLPAYNHVRVAELVIEKAKRMVETGKDVIILLDSITRLARAYN
TATPSSGKVLSGGVDANALHKPKRFFGAARNIENGGSLTIVATALIDTGSRMDDVIFEEF
KGTGNSEIVLDRNISDRRIYPAINIIKSGTRKEELLQGVAELQKIWAIRSAISQMDDIEA
LKFLYSKMLKTKDNVELLSIMNE
NT seq
1332 nt
NT seq
+upstream
nt +downstream
nt
ttgctacaaaattactgctttcttgcgaggacttatggaaaaagaaaaaaacaacatcaa
agaacccacattccagtggagggttataaaattgaagacttaaaactacttgacttagaa
aatctagttaaaatagctaatgaatgcgagatagaaaatcctagagaatttcgtcgtcaa
gaacttatttttgaaattttaaaagctcaaaccaaaaagggtggctttatcctcttcaca
ggaattttagaaatttcttcagaaggttatggctttttaaggggtatggattcaaattta
agcgatagtgtcaatgacgcctatgtttcaaactcacaaattcgcaaatttgccctgcgc
gtaggcgatatagtaactggacaagttagagagcctaaggatcaagaaaaatactatgct
cttttgaaaatagaagcgattaattatttgcctttgcaagaagctaaagaaagaccttta
tttgataacttaactcctatttttccaacagaaaaaatcaaactcgaatacgatgctatg
aaattaactggaagaattttagatctttttacccctataggtaaaggacaacgcggactc
atcgtagcaccgccaagaacgggtaaaacagaacttatgaaagagctagcaagcgcgatt
gctaaaaatcaccccgaaatgcatttaatcgttcttttagtcgatgaaagacctgaagag
gttactgatatgcaaagatgtgtaaagggtgaagtgtttagctctacttttgatttacct
gcttataatcatgttcgcgtagcagaactagttatcgaaaaagcaaaaagaatggtagaa
acaggcaaagatgttatcattttactagatagtatcacaaggcttgctagagcttataac
accgcaactccaagcagtggaaaggtattaagtggtggggtggatgctaatgcacttcat
aaacctaaacgcttttttggtgcagcaagaaatatagaaaatggcggatctttgaccata
gtagcaactgcacttatcgacacaggttcaagaatggatgatgtgatttttgaagaattt
aaaggcacaggaaatagcgaaatagtcttagatagaaatatttcagatagaagaatttat
cctgcgattaatatcatcaaatctggaactcgaaaagaagaacttttacaaggagtagca
gagctacaaaaaatttgggctattcgctcggcaatttcccaaatggatgatatcgaagcg
cttaaatttctttattcaaaaatgttaaaaactaaagacaatgtagaacttttatctatt
atgaatgagtag
DBGET
integrated database retrieval system
