Campylobacter coli RM4661: YSS_06510
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Entry
YSS_06510 CDS
T03166
Name
(GenBank) ribonuclease
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
ccy
Campylobacter coli RM4661
Pathway
ccy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
YSS_06510
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccy03019
]
YSS_06510
Messenger RNA biogenesis [BR:
ccy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
YSS_06510
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GFIT
Motif
Pfam:
RNase_Y_N
HD
HDOD
KH_1
KH_2
dUTPase
KH_KhpA-B
MurD-like_N
EMC3_TMCO1
Cas3_HD
Motif
Other DBs
NCBI-ProteinID:
AHK77161
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All DBs
Position
1216977..1218530
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AA seq
517 aa
AA seq
DB search
MIESLIALITAIVGLGIGYLVAKKINDAKYEIFVEQAKAKAKAIEYEAELILKDAKNSIL
NAELEVKKKYEDKTHKIQKEFNQKFDELSKKEQKLQLQEESLKENQEELLRSKKQMLDLE
SDADKLKKQYQTKLNDVLNILEHSAGLTQDEAKNIILEKVEENSRNEIAHIVRRYEEEAR
NEAKRKANYIIAQATSRFAGEFAAERLINVVNIKNDELKGRIIGKEGRNVKTLEMVLGVD
IIIDDTPGAIIVSCFNLYRRAIATKVVELLVEDGRIQPARIEEIHEKVCKEFDNAILEEG
ETILMDLGLSKVHPEITKLIGKLKYRASYGQNALAHSLEVAHLAGIIAAECGGDENLARR
AGILHDIGKALTHDFEGSHVDLGAELCKRYKEHPVVINAIYAHHGHEEATSIESAAVCAA
DTLSAARPGARREVLEAFLRRVSELEEIAKSKEGIKNAYAINAGREIRVIANAKLVNDDE
SVLLAKEIAAEIQEKMQYPGEIKVNVIRELRAIEYAK
NT seq
1554 nt
NT seq
+upstream
nt +downstream
nt
atgatagaatcacttatcgcacttataaccgctatagtcggtcttggaataggatattta
gttgcaaaaaaaatcaatgatgctaaatatgaaatttttgttgagcaagcaaaagcgaaa
gcaaaagctatagaatacgaagctgaactgattttaaaagatgccaaaaattcaatcctt
aatgccgaacttgaagtgaaaaaaaaatacgaggataaaactcacaaaattcaaaaagaa
ttcaatcaaaaatttgatgaattatccaaaaaagagcaaaaacttcaacttcaagaagaa
agcttaaaagaaaatcaagaagaattattacgctctaaaaaacaaatgcttgatttagaa
tcagatgctgacaagcttaaaaaacaataccaaacaaaactcaatgatgttttaaatatt
ttagaacattcagcagggctcactcaagatgaagcaaaaaatatcattcttgaaaaagta
gaagaaaactcacgcaatgaaattgctcatatcgttaggagatatgaagaagaggctaga
aatgaagctaaaagaaaggcaaattacatcatagcacaagcaacctctcgttttgcagga
gaatttgctgctgaaagacttattaatgttgtcaacatcaaaaacgatgagttaaaaggg
cgtatcataggcaaagaaggacgcaatgttaaaaccttagaaatggttttaggagtagat
atcatcatcgatgatacacctggagctatcatagtaagttgctttaatctttatcgccgt
gctattgcaactaaggtggttgaacttttagtagaagatggaagaattcagcctgctcgc
atagaagaaattcacgaaaaagtatgcaaagaatttgataatgctattttagaagaaggt
gaaactatactgatggacttagggctttctaaggtccatccagaaatcaccaaacttata
ggaaagcttaaataccgcgcaagctatggacaaaatgctttagcacattctttagaagta
gctcatttggcaggaatcatcgctgctgagtgtggaggggatgaaaatttagcacgacgc
gcaggaattttacacgacataggcaaagctttaacgcatgattttgaaggctctcatgta
gacttaggagcagaactttgcaaacgctataaagaacatcctgtggttattaatgctatt
tatgctcaccatggacatgaagaagctacaagcatagaatcagcagccgtttgcgcagcc
gatacgctcagtgctgcaagaccgggtgctagacgcgaagtcttagaagctttcttaaga
agagtaagcgagcttgaagagattgctaaaagcaaagaaggtattaaaaatgcttatgcg
attaatgcgggaagagaaattcgtgtcattgcaaatgcaaaacttgtaaatgatgatgaa
agcgtgcttttagccaaagaaatagctgctgaaattcaagaaaaaatgcaataccctgga
gaaatcaaggtaaatgtcatacgcgaactaagagccatagaatacgccaaataa
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