Sinomonas cyclohexanicum: SCMU_25320
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Entry
SCMU_25320 CDS
T07918
Name
(GenBank) hypothetical protein
KO
K03628
transcription termination factor Rho
Organism
ccyc
Sinomonas cyclohexanicum
Pathway
ccyc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccyc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SCMU_25320
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccyc03021
]
SCMU_25320
03019 Messenger RNA biogenesis [BR:
ccyc03019
]
SCMU_25320
Transcription machinery [BR:
ccyc03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
SCMU_25320
Messenger RNA biogenesis [BR:
ccyc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
SCMU_25320
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATP-synt_ab
Rho_RNA_bind
Rho_N
Spore_III_AA
AAA_25
NACHT
Motif
Other DBs
NCBI-ProteinID:
BCT76690
UniProt:
A0ABN6FK63
LinkDB
All DBs
Position
complement(2639315..2641519)
Genome browser
AA seq
734 aa
AA seq
DB search
MTQTTELNPAVESSSASESKGIAGLKLAQLQALASQLGITGGSRMRKGDLVAAITAHQKG
EPVGRPAQQRRAAAAEAPAQTTLPEPQAAAEKAAAETAPAAPAVEQAAPSADGAASAPAA
PRARRTRRRAGSDGIVTPAAAPAAEEGAPQAEPAAESVAQPQAETTAEAPTAEPTTRPSR
TRNRNRRAEAGEASTEAAPAPREERAPREERAPREERAPREERGETAEAPAHEQGEAPAR
HEEAGEGRGRRGQQDRAQQQERQHERGQQDRRRDEGEGEEGGSRRSRRNRRGRDRDESQQ
SQQVGRSDRFRDRNERVRDRGGRRSAGPEFDDTEVTEDDVLLPVAGILDVLENYAFIRTS
GYLPGPNDVYVPLTQVKKYGLRKGDAVVGAIRAPREGEENQSHSQGGRQGHGNRQKFNAL
VRVTSVNGKAPEEMKGRVEFTKLVPLYPSERLRLETDPKKIGPRVIDLVAPIGKGQRGLI
VSPPKAGKTLILQSIANAITTNNPEVHLMMVLVDERPEEVTDMQRSVKGEVIASTFDRPA
DDHTTVAELAIERAKRLVEMGMDVVVLLDSMTRLGRAYNLAAPASGRILSGGVDSAALYP
PKRFFGAARNIENGGSLTILATALVETGSKMDEVIFEEFKGTGNMELRLSRALADKRIFP
AVDVNASGTRREENLLSPEEVKIMWRLRRVLSGLDTQQALELLTTKIRETSSNVEFLLQV
QKTTLAGKGESDRH
NT seq
2205 nt
NT seq
+upstream
nt +downstream
nt
gtgacacagaccactgagctgaacccagcagtggaatcctcctccgcgtccgagtccaag
ggaattgccggcctcaagctcgcgcagttgcaggccttggcgtcccagctgggcatcacc
ggtggatctcgcatgcgcaagggcgacctcgtcgcagcgatcaccgcgcaccagaagggc
gagcccgtgggccgcccggcccagcagcgccgcgccgctgccgccgaggcacccgcccag
accacgctccccgagccccaggccgcggccgagaaggccgcggccgagacggcgccggcc
gcccccgccgtggagcaggccgcgccgtcggccgacggcgcggcctcagcgcccgcggct
ccgcgcgcccgccgtacacgccgccgcgccggtagcgacggcatcgtgactccggccgcg
gcgcccgccgccgaggaaggcgcgccgcaggccgagcccgccgcagagtccgtggcgcag
ccgcaggccgagaccacggcagaggcgcccaccgccgagccgacgacgcgcccgagccgt
acccgcaaccgcaaccgccgcgccgaggcgggcgaggcctcgaccgaggcggccccggcc
ccccgcgaggagcgcgcgccccgtgaggagcgcgccccccgtgaggagcgcgcgcctcgt
gaggagcgcggcgagaccgccgaggcccctgcgcacgagcagggcgaggcgcccgcccgc
cacgaagaagcaggcgaaggccgtggccgccgtggccagcaggaccgggcgcagcagcag
gagcgccagcacgagcgcggccagcaggaccgccgccgcgacgagggcgagggcgaggag
ggcggctcgcgccgttcgcgccgcaaccgccgtggccgcgaccgcgacgagtctcagcag
tcgcagcaggtcggccgcagcgaccgcttccgcgaccgcaacgagcgcgtgcgcgaccgg
ggcgggcgccgcagcgcgggccccgagttcgacgacaccgaggtgaccgaggacgacgtc
ctgctccccgtggccggcatccttgatgtcctcgagaactacgcattcatccgcacctcc
ggctacctcccgggcccgaacgacgtctacgtcccgctcacccaggtcaagaagtacggc
ctgcgcaagggtgacgccgtggtcggcgcgatccgcgccccccgcgagggcgaggagaac
cagagccacagccagggcggtcgccagggccacggcaaccgccagaagttcaacgccctc
gtgcgtgtcacgagcgtgaacggcaaggcccccgaggagatgaagggccgcgtcgagttc
accaagctcgtgccgctctacccctccgagcgcctccggctcgagacggacccgaagaag
atcggcccccgcgtgatcgacctcgtggccccgatcggcaagggccagcgcggcctcatc
gtctccccgccgaaggccggcaagacgctcatcctgcagtccatcgcgaacgcgatcacc
acgaacaaccccgaggtgcacctcatgatggtgctcgtggacgagcgccccgaagaggtc
acggacatgcagcgctcggtcaagggcgaggtcatcgcctcgaccttcgaccgcccggct
gacgaccacacgaccgtcgcggagctcgccatcgagcgcgccaagcgcctcgtggagatg
ggcatggacgtcgtcgtgctcctggactcgatgacccgtcttggccgcgcgtacaacctc
gccgcccccgcatcgggacgaatcctctcgggcggcgtcgactcggccgcgctctacccg
ccgaagcgcttcttcggcgcggcgcgcaacatcgagaacggcggctccctgacgatcctc
gccacggcgctcgtcgagaccggctccaagatggacgaggtcatcttcgaggagttcaag
ggcacgggcaacatggagctccgcctctcccgcgcgctggccgacaagcgcatcttcccg
gccgtggacgtcaacgcgtccggcacgcgccgcgaggagaacctgctctcgcctgaagag
gtcaagatcatgtggcgtctgcgccgggtgctctcgggcctcgacacgcagcaggccctc
gagctgctgaccacgaagatccgggagacgagctcgaacgtcgagttcctcctccaggtg
cagaagacgaccctcgccggcaagggcgagagcgacaggcactag
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