KEGG   Sinomonas cyclohexanicum: SCMU_25320
Entry
SCMU_25320        CDS       T07918                                 
Name
(GenBank) hypothetical protein
  KO
K03628  transcription termination factor Rho
Organism
ccyc  Sinomonas cyclohexanicum
Pathway
ccyc03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ccyc00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    SCMU_25320
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ccyc03021]
    SCMU_25320
   03019 Messenger RNA biogenesis [BR:ccyc03019]
    SCMU_25320
Transcription machinery [BR:ccyc03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     SCMU_25320
Messenger RNA biogenesis [BR:ccyc03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     SCMU_25320
SSDB
Motif
Pfam: ATP-synt_ab Rho_RNA_bind Rho_N Spore_III_AA AAA_25 NACHT
Other DBs
NCBI-ProteinID: BCT76690
UniProt: A0ABN6FK63
LinkDB
Position
complement(2639315..2641519)
AA seq 734 aa
MTQTTELNPAVESSSASESKGIAGLKLAQLQALASQLGITGGSRMRKGDLVAAITAHQKG
EPVGRPAQQRRAAAAEAPAQTTLPEPQAAAEKAAAETAPAAPAVEQAAPSADGAASAPAA
PRARRTRRRAGSDGIVTPAAAPAAEEGAPQAEPAAESVAQPQAETTAEAPTAEPTTRPSR
TRNRNRRAEAGEASTEAAPAPREERAPREERAPREERAPREERGETAEAPAHEQGEAPAR
HEEAGEGRGRRGQQDRAQQQERQHERGQQDRRRDEGEGEEGGSRRSRRNRRGRDRDESQQ
SQQVGRSDRFRDRNERVRDRGGRRSAGPEFDDTEVTEDDVLLPVAGILDVLENYAFIRTS
GYLPGPNDVYVPLTQVKKYGLRKGDAVVGAIRAPREGEENQSHSQGGRQGHGNRQKFNAL
VRVTSVNGKAPEEMKGRVEFTKLVPLYPSERLRLETDPKKIGPRVIDLVAPIGKGQRGLI
VSPPKAGKTLILQSIANAITTNNPEVHLMMVLVDERPEEVTDMQRSVKGEVIASTFDRPA
DDHTTVAELAIERAKRLVEMGMDVVVLLDSMTRLGRAYNLAAPASGRILSGGVDSAALYP
PKRFFGAARNIENGGSLTILATALVETGSKMDEVIFEEFKGTGNMELRLSRALADKRIFP
AVDVNASGTRREENLLSPEEVKIMWRLRRVLSGLDTQQALELLTTKIRETSSNVEFLLQV
QKTTLAGKGESDRH
NT seq 2205 nt   +upstreamnt  +downstreamnt
gtgacacagaccactgagctgaacccagcagtggaatcctcctccgcgtccgagtccaag
ggaattgccggcctcaagctcgcgcagttgcaggccttggcgtcccagctgggcatcacc
ggtggatctcgcatgcgcaagggcgacctcgtcgcagcgatcaccgcgcaccagaagggc
gagcccgtgggccgcccggcccagcagcgccgcgccgctgccgccgaggcacccgcccag
accacgctccccgagccccaggccgcggccgagaaggccgcggccgagacggcgccggcc
gcccccgccgtggagcaggccgcgccgtcggccgacggcgcggcctcagcgcccgcggct
ccgcgcgcccgccgtacacgccgccgcgccggtagcgacggcatcgtgactccggccgcg
gcgcccgccgccgaggaaggcgcgccgcaggccgagcccgccgcagagtccgtggcgcag
ccgcaggccgagaccacggcagaggcgcccaccgccgagccgacgacgcgcccgagccgt
acccgcaaccgcaaccgccgcgccgaggcgggcgaggcctcgaccgaggcggccccggcc
ccccgcgaggagcgcgcgccccgtgaggagcgcgccccccgtgaggagcgcgcgcctcgt
gaggagcgcggcgagaccgccgaggcccctgcgcacgagcagggcgaggcgcccgcccgc
cacgaagaagcaggcgaaggccgtggccgccgtggccagcaggaccgggcgcagcagcag
gagcgccagcacgagcgcggccagcaggaccgccgccgcgacgagggcgagggcgaggag
ggcggctcgcgccgttcgcgccgcaaccgccgtggccgcgaccgcgacgagtctcagcag
tcgcagcaggtcggccgcagcgaccgcttccgcgaccgcaacgagcgcgtgcgcgaccgg
ggcgggcgccgcagcgcgggccccgagttcgacgacaccgaggtgaccgaggacgacgtc
ctgctccccgtggccggcatccttgatgtcctcgagaactacgcattcatccgcacctcc
ggctacctcccgggcccgaacgacgtctacgtcccgctcacccaggtcaagaagtacggc
ctgcgcaagggtgacgccgtggtcggcgcgatccgcgccccccgcgagggcgaggagaac
cagagccacagccagggcggtcgccagggccacggcaaccgccagaagttcaacgccctc
gtgcgtgtcacgagcgtgaacggcaaggcccccgaggagatgaagggccgcgtcgagttc
accaagctcgtgccgctctacccctccgagcgcctccggctcgagacggacccgaagaag
atcggcccccgcgtgatcgacctcgtggccccgatcggcaagggccagcgcggcctcatc
gtctccccgccgaaggccggcaagacgctcatcctgcagtccatcgcgaacgcgatcacc
acgaacaaccccgaggtgcacctcatgatggtgctcgtggacgagcgccccgaagaggtc
acggacatgcagcgctcggtcaagggcgaggtcatcgcctcgaccttcgaccgcccggct
gacgaccacacgaccgtcgcggagctcgccatcgagcgcgccaagcgcctcgtggagatg
ggcatggacgtcgtcgtgctcctggactcgatgacccgtcttggccgcgcgtacaacctc
gccgcccccgcatcgggacgaatcctctcgggcggcgtcgactcggccgcgctctacccg
ccgaagcgcttcttcggcgcggcgcgcaacatcgagaacggcggctccctgacgatcctc
gccacggcgctcgtcgagaccggctccaagatggacgaggtcatcttcgaggagttcaag
ggcacgggcaacatggagctccgcctctcccgcgcgctggccgacaagcgcatcttcccg
gccgtggacgtcaacgcgtccggcacgcgccgcgaggagaacctgctctcgcctgaagag
gtcaagatcatgtggcgtctgcgccgggtgctctcgggcctcgacacgcagcaggccctc
gagctgctgaccacgaagatccgggagacgagctcgaacgtcgagttcctcctccaggtg
cagaagacgaccctcgccggcaagggcgagagcgacaggcactag

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