Sinomonas cyclohexanicum: SCMU_33010
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Entry
SCMU_33010 CDS
T07918
Symbol
topA
Name
(GenBank) DNA topoisomerase 1
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
ccyc
Sinomonas cyclohexanicum
Brite
KEGG Orthology (KO) [BR:
ccyc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ccyc03032
]
SCMU_33010 (topA)
03400 DNA repair and recombination proteins [BR:
ccyc03400
]
SCMU_33010 (topA)
Enzymes [BR:
ccyc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
SCMU_33010 (topA)
DNA replication proteins [BR:
ccyc03032
]
Prokaryotic type
DNA Topoisomerases
SCMU_33010 (topA)
DNA repair and recombination proteins [BR:
ccyc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
SCMU_33010 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Toprim_4
Toprim_2
Motif
Other DBs
NCBI-ProteinID:
BCT77459
LinkDB
All DBs
Position
complement(3457643..3460423)
Genome browser
AA seq
926 aa
AA seq
DB search
MATKAKTGKKLVIVESPAKSKTIAQYLGDGFEVDASMGHIRDLPQPSDLPAELKKTSVGK
FAVDIENGFEPYYVVSPDKKKKVAELKAKLKDADELYLATDGDREGEAIAWHLLEVLKPK
VPVHRLTFPEITKEAIQRAMAELRDVDESLVDAQETRRVLDRLYGYEISPVLWRKVAGGL
SAGRVQSVATRLVVERERERMAFRTANYWDLVATLAPLEGGGTRGAATADDGARRQSFQA
RLASVDGKKVATGRDFNDRGELTAKNAELLTEATATALAAGLEGAAFAVRSVEEKPYTRR
PAAPFTTSTLQQESARKLRFSARVTMQVAQRLYENGYITYMRTDSTALSDQAVTAARRQA
SELYGPEYVPSRPRVYASKAKNAQEAHEAIRPAGDAFRTPAQVAKQLSGDEFRLYELIWK
RTVASQMEDAKGSTATVRLGATAVSGEAAGRDAEFAASGTVITFRGFLAAYEEGRDEVRE
DTEGAGGGGASSEGGRLPVLAKGQPLDALEISSNGHQTSPPPRYTEASLVKTLEERGIGR
PSTYAATISTIMDRGYVRARGTALVPSWIAFSVVRLLEEHFHDYVDYDFTAEMEEDLDKI
AAGEQAGSDWLSHFYFGDDHNPGLTTIVNGLGEIDAREVNSVELAPGIVLRVGKYGPYLE
KPLPADAPEGTVPERANVPDDLAPDELTAEKALELMESAGPEEHILGTDPLTGHEIVAKN
GRYGAYVTEVITELTPEQIAAQPVEYYKNGKPKPPKKPVKVKPRTASLFKSMTLDTVTLD
QALQLLTLPRRLGEDTEGNAITVQNGRFGPYLKKGTDSRSIGSEEEIFTITLEQALEIYS
QPKTRGGRTAAAPLAEFGDDPTSGKPIVVKEGRFGPYITDGVTNITVPRATSIEELTRER
AIELLAEKRAKGPAKKPAGRTRAGAK
NT seq
2781 nt
NT seq
+upstream
nt +downstream
nt
gtggccaccaaggctaaaaccggcaagaagctcgtgatcgtggagtcgccggccaagagc
aagacgatcgcccagtatctgggcgacggcttcgaggtcgacgcgtccatgggtcacatc
cgggacctcccgcagccctctgacctgcccgcggagctcaagaagacctcggtgggcaag
ttcgccgtcgacatcgagaacggcttcgagccgtactacgtcgtgtccccggacaagaag
aagaaggtcgcggagctcaaggccaagctcaaggacgccgacgagctctacctcgccacc
gacggtgaccgcgagggcgaggccatcgcgtggcacctcctcgaggtgctcaagcccaag
gtgcccgtgcaccggctgacgttccccgagatcaccaaggaagccatccagcgcgcgatg
gcggagctgcgcgacgtcgacgagtcgctcgtggacgcgcaggagacccgccgcgtcctc
gaccgcctctatggctacgagatctccccggtgctgtggcgcaaggtggcgggcgggctc
tcggccggccgggtgcagtccgtcgcgacgcgcctcgtggtggagcgcgagcgggagcgt
atggcgttccgcaccgcgaactactgggacctcgtggcgaccctcgcaccgctcgagggc
ggcggcacgcggggtgcagccaccgcggacgacggcgcgcgccgccagagcttccaggcc
cgcctcgcgtcggtggacgggaagaaggtcgccacgggccgtgacttcaacgaccggggc
gagctcacggcgaagaacgccgagctgctcaccgaggcgacggccactgcgctcgccgcg
ggactcgaaggagcggccttcgcggtccgttcggtcgaggagaagccctacacgcgccgt
ccggcggcaccgttcaccacatccacgctccagcaggagtcggcccgcaagctgcggttc
tccgcgcgcgtgaccatgcaggtggcccagcgcctgtacgagaacggctacatcacgtat
atgcgtaccgactcgaccgcgctctcggaccaggccgtgaccgccgcccgccggcaggcc
tcggagctgtatgggcccgagtacgtcccctcccgcccgcgcgtgtacgcgtcgaaggcg
aagaacgcgcaggaggcgcacgaggcgatccgtcccgcgggcgacgcgttccgcaccccc
gcgcaggttgccaagcagctctccggggacgagttccggctctacgagctcatctggaag
cggaccgtcgcgtcccagatggaggatgccaagggttcgaccgcgacggtccgcctggga
gcgacggcagtctccggcgaggccgcgggacgcgacgccgagttcgccgcatccggcacg
gtcatcacgttccgtggcttcctcgccgcgtacgaggagggccgtgacgaggtccgcgag
gatacggagggcgccggaggcggcggcgcgtcctcggagggcggtcggctcccggtcctg
gcgaagggccagcccctcgacgccctcgagatctcctcgaacggccaccagacgtctccg
cccccgcgctacaccgaggcctcgctcgtgaagacgctcgaggagcgcgggatcggccgt
ccgtccacgtacgcggccacgatctccacgatcatggaccgcggctacgtccgggcgcgc
ggcaccgcgctcgtgccgagctggatcgcgttctccgtggtgcgcctgctcgaagagcac
ttccacgactacgtcgactacgacttcaccgccgagatggaggaggacctcgacaagatc
gcggccggcgagcaggctgggtcggactggctgagccacttctacttcggcgacgaccac
aaccccggcctgaccacgatcgtcaacgggctgggcgagatcgacgcgcgcgaggtgaac
tccgtggagctcgcaccggggatcgtgctgcgcgtgggcaagtacggcccgtacctggag
aagccgctccccgcggacgcccccgaggggacggttcctgagcgggccaacgtccccgac
gacctcgcgccggacgagctcaccgcggagaaggcgctcgagctcatggagagcgcgggc
cccgaggaacacatcctcgggaccgacccgctcacgggacacgagatcgtcgccaagaac
ggccgctacggcgcctacgtcaccgaggtgatcaccgagttgacgcccgagcagatcgcc
gcccagccggtcgagtactacaagaacggcaagcccaagccgcccaagaagccggtcaag
gtcaagccccgcacggcctcgctgttcaagtccatgaccctggacaccgtcaccctggac
caggcgctccagctgctcacgctgccgcgccgcctcggcgaggacaccgagggcaacgcc
atcacggtccagaacggccggttcggcccctacctgaagaagggcacggactctcggtcg
atcggcagcgaggaggagatcttcacgatcaccctcgagcaggccctcgagatctactca
cagcccaagacacgtggcggcaggacggccgcggcgccgctggccgagttcggggacgac
ccgacctcgggcaagccgatcgtggtcaaggagggccggttcgggccgtacatcacggat
ggcgtcacgaacatcacggtcccccgggccacctcgatcgaggagctcacccgcgagcgt
gccatcgagctcctcgccgagaagcgtgccaagggtccggccaagaagccggccggccgc
accagggcgggcgcgaagtga
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