Capnocytophaga cynodegmi: CGC48_00335
Help
Entry
CGC48_00335 CDS
T05499
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
ccyn
Capnocytophaga cynodegmi
Brite
KEGG Orthology (KO) [BR:
ccyn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ccyn03009
]
CGC48_00335
Enzymes [BR:
ccyn01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
CGC48_00335
Ribosome biogenesis [BR:
ccyn03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
CGC48_00335
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Methyltransf_25
TRM5-TYW2_MTfase
MTS
Methyltransf_15
PCMT
Cons_hypoth95
N6_N4_Mtase
Methyltransf_11
FtsJ
Methyltransf_ANTKMT
PrmA
UPF0020
RrnaAD
Methyltransf_37
Methyltransf_2
PEP_mutase
Motif
Other DBs
NCBI-ProteinID:
ATA69219
LinkDB
All DBs
Position
complement(74717..76126)
Genome browser
AA seq
469 aa
AA seq
DB search
MGKKNQKLVFENIEVIDAGAKGKSVAKAPDGRVIFLSDAVPGDVVDVQTTKKRNAYYEGF
VTKLHKSSERRTEPVCEHFGYCGGCKWQNMSYEHQLFYKQKEVENNLKRLGKIELPEIQP
ILGSEKIYFYRNKMEFSFSDTRWLTPEEIKDSESIDNRNGLGFHISGAWDKILDVKKCHL
QADPSNAIRLAVKQFALKHEMPFYSPRNQSGFLRSMMIRTASTGELMVVIQFFEENKTQR
ELLLDFLSEKFPQITSLQYIINGKANDSIYDQEIICYKGRDYIYEEMEGLRFKINAKSFY
QTNSEQAYELYKVARDFAQLTGNELVYDLYTGTGTIAQFVAKKARKVVGVEAVPEAIEDA
KVNAQNNNITNVSFFVGDMKNVFNEAFIAENGVPDLIITDPPRDGMHKDVVQQILNIAPP
KVVYVSCNSATQARDLALMDAMYKVTKVQPVDMFPQTHHVENVVLLEKR
NT seq
1410 nt
NT seq
+upstream
nt +downstream
nt
atgggaaagaaaaatcagaagttagtatttgaaaatatagaagtcatcgatgctggggca
aagggcaaaagtgtagccaaagctcctgacggacgggttattttcctgtcagatgctgtt
ccaggtgacgtagttgatgtgcaaactaccaaaaaaagaaacgcttattacgaaggattt
gtaacaaaacttcacaaatcatcagaaaggcgtaccgaacccgtttgcgaacatttcggg
tattgtgggggatgtaagtggcagaatatgagctacgaacatcaacttttttacaaacaa
aaagaagttgaaaataatctcaaacgcttaggaaaaatagaactccctgaaatacaacct
attttaggctcagaaaaaatctatttttaccgcaataaaatggaattttccttttcggat
acgcgttggcttacgcctgaagagataaaagattcagaaagtattgacaatcgcaacggc
ttaggatttcacatttcaggggcttgggataaaattcttgacgttaaaaaatgccatcta
caagccgacccttccaacgccatacgcttggcggtaaagcagttcgctttgaaacacgaa
atgcctttctatagccctcgtaatcagtcaggtttcttacgttcgatgatgatacgaact
gcttccactggtgagcttatggtggttattcagttttttgaggaaaataaaactcaacgg
gagttgctgctcgattttctgtcagaaaaattcccgcaaatcacatcgcttcaatacatt
atcaatggaaaagcaaacgattctatttacgatcaagaaattatttgctacaaaggacgc
gattatatctatgaggaaatggaaggtttgcggtttaaaatcaatgctaagtccttctat
cagactaattccgaacaggcttatgaactttacaaagtggctcgtgattttgcccagcta
acgggaaatgaattggtgtacgacctttacaccggaacgggcactattgctcaattcgta
gcaaagaaagcccgaaaagtagttggcgtagaggcagttccggaagctattgaagatgct
aaagtcaatgcccagaacaataatattacgaacgtaagtttttttgtgggagatatgaaa
aacgttttcaatgaagcgtttatagctgaaaatggagtacctgaccttatcattaccgac
ccacctcgcgacggaatgcacaaggacgtggtacaacaaatcctcaacattgctccgcct
aaagtggtgtatgtgagttgtaattccgctacacaagcacgtgatttggcgttgatggac
gcaatgtacaaggtcaccaaagtgcaacctgtcgatatgtttccgcagacgcaccacgta
gaaaatgtagtacttttggaaaaacgataa
DBGET
integrated database retrieval system
