Capnocytophaga cynodegmi: CGC48_00535
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Entry
CGC48_00535 CDS
T05499
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
ccyn
Capnocytophaga cynodegmi
Pathway
ccyn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccyn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CGC48_00535
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccyn03021
]
CGC48_00535
03019 Messenger RNA biogenesis [BR:
ccyn03019
]
CGC48_00535
Transcription machinery [BR:
ccyn03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
CGC48_00535
Messenger RNA biogenesis [BR:
ccyn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
CGC48_00535
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
AAA_25
OB_RNB
AAA_22
AAA
Motif
Other DBs
NCBI-ProteinID:
ATA67235
UniProt:
A0A250E678
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All DBs
Position
121769..123499
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AA seq
576 aa
AA seq
DB search
MFDITDLKSMKLPELQEIAQEMKVPKFRSFNKSDLIYQILDLQASNPPLPQKQEKEKETS
EKKANSVKTKNKKKETVQKVPSETKAQQADKENTNSKEKKQEPTQKQVVKKENPVTNKEN
KKTEVKETSPQDSDEVSREPKQFKKQQNFQKKNNQQNTQNQQNTQNNKSNFNKNGNGNNQ
NHSNNNHSENFDKEKKNRYRSPEFEFDGIVECEGVLDIMQDGYGFLRSSDYNYLASPDDI
YVSQSQIRLFGLQTGDTVLGAVRPPKEGEKYFPLLKVLKINGLDPQIVRDRVSFEHLTPL
FPDEKFKLAEKGSTISTRIIDLFSPIGKGQRGMIVAQPKTGKTMLLKDIANAISKNHPEV
YLMVLLIDERPEEVTDMQRSVKGEIIASTFDKEASEHVRIANIVLEKAKRLVECGHDVVI
LLDSITRLARAYNTVQPASGKVLTGGVDANALHKPKRFFGAARNIENGGSLSIIATALTE
TGSKMDEVIFEEFKGTGNMELQLDRRISNRRIFPAIDLISSSTRRDDLLLDEKTLQRTWI
LRKYLADMNPVEAMEFMETQMKQTRNNEEFLITMNN
NT seq
1731 nt
NT seq
+upstream
nt +downstream
nt
atgtttgacattactgatttaaaatctatgaagcttcctgagttacaggaaatagctcag
gagatgaaggtgcctaaatttcgcagctttaacaaaagtgatttaatttatcaaatactt
gaccttcaagcatcaaatcctccattaccacaaaaacaagaaaaagagaaagaaacttct
gaaaaaaaagcaaattctgtaaaaactaaaaataagaaaaaggaaactgttcaaaaagta
ccttctgaaactaaagctcaacaagctgataaagagaatactaattcaaaagagaaaaaa
caggagcctacacaaaaacaagttgtaaaaaaagaaaatcctgttacaaataaagaaaac
aaaaaaacagaagttaaagaaacctcacctcaagattctgacgaagtaagcagagaacca
aaacaatttaaaaaacagcaaaacttccagaagaaaaacaaccaacaaaacacacaaaat
cagcaaaatacacaaaataacaaatccaacttcaataagaatggtaatgggaataatcaa
aaccattcaaataacaaccattccgaaaattttgacaaggaaaagaaaaatcgttatcga
tcacctgaatttgaatttgacggaattgtagaatgtgaaggagttttggatataatgcaa
gacgggtatggttttcttcgttcttccgattacaattatttagcctcacctgatgatatt
tatgtgtcacaatctcaaattaggctttttggattacaaacgggtgatacagtattggga
gcggtacgtcctccgaaagaaggagaaaaatattttcctcttcttaaagtactgaaaata
aacggacttgaccctcaaattgtacgtgatcgcgtttctttcgaacatttaacgcctctt
ttcccagatgaaaaatttaagttagcagaaaagggaagtaccatttctacccgaataatt
gacttgttctcacctattgggaaaggacaaagaggaatgattgttgctcagcctaaaact
ggtaaaacaatgttactcaaagatatagcaaatgctatttctaaaaatcatcccgaagta
tacttaatggtattactcattgatgagcgtcctgaggaagtgactgatatgcaacgaagt
gtgaaaggtgaaattattgcttccacttttgacaaagaggcttcagagcacgttcgaatt
gcaaatattgttttggaaaaagccaaacgactcgtagaatgcggacacgatgtagtaatt
ctgttagattcaattacacgattagccagagcctataatacggttcaacctgcttcaggt
aaagtacttacaggaggagttgatgcgaatgcacttcacaaaccaaaacgttttttcggt
gcggctcgaaatattgaaaatggaggttctctctcaatcattgctaccgcacttactgaa
actggctcaaaaatggatgaagttatcttcgaggaattcaaaggaacaggaaatatggaa
ttacaattagatagacgtatttcgaaccgccgtatcttccctgccattgaccttatttca
tcttcaacacgtcgtgatgatttgctactcgatgaaaaaacacttcaacgtacttggata
ttgcgtaaatatttggcagatatgaatcctgtagaagcaatggaatttatggaaacacaa
atgaaacaaactcgtaataacgaagaatttcttatcactatgaataattag
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