Capnocytophaga cynodegmi: CGC48_03560
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Entry
CGC48_03560 CDS
T05499
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
ccyn
Capnocytophaga cynodegmi
Pathway
ccyn03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ccyn00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CGC48_03560
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccyn03021
]
CGC48_03560
03400 DNA repair and recombination proteins [BR:
ccyn03400
]
CGC48_03560
Enzymes [BR:
ccyn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CGC48_03560
Transcription machinery [BR:
ccyn03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CGC48_03560
DNA repair and recombination proteins [BR:
ccyn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CGC48_03560
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
RNA_pol_A_CTD
RNA_pol_L_2
Fungal_KA1
Motif
Other DBs
NCBI-ProteinID:
ATA67789
UniProt:
A0A0B7H9X6
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All DBs
Position
complement(783169..784161)
Genome browser
AA seq
330 aa
AA seq
DB search
MALFNFQKPDKVIMIESSDFEGRFEFRPLEPGYGLTIGNALRRVMLSSLEGFAITSVKFD
KVGHEFSTISGVVEDVTEIILNLKQVRFKRQIEDVENETATISVSGKKQLTAGDFQKYLS
GFQVLNTDLVICNMESSVTFDMEITIEKGRGYVPAEENANPNAAIGVIATDAIFTPIKNV
KYSIENYRVEQKTDYEKLVFEIKTDGSIHPRQALTEAAKTLIHHFMLFSDERITLESDEI
AQTDAYDEESLHMRQLLKTRLVDMDLSVRALNCLKAAEVDTLGDLVSFNKADLMKFRNFG
KKSLTELDELVANKGLTFGMDLSKYKLDRD
NT seq
993 nt
NT seq
+upstream
nt +downstream
nt
atggcattattcaactttcaaaaacccgataaggttataatgattgaatcatctgatttt
gaggggcgatttgagtttcgtcctttggaaccaggatatggtttaactataggtaacgca
ttacgtagagttatgctctcttctttggagggtttcgcaatcacttctgtaaagtttgac
aaagtaggacacgagttttctactatatcaggtgttgtggaagatgttactgaaattatc
ttgaatttgaaacaagtgcgttttaaacgacagattgaagatgtagagaatgaaacagca
acaatttctgtttcaggaaaaaaacagttgactgccggtgattttcaaaaatatctatca
ggatttcaagtcttgaatacagatttggtaatttgtaatatggaatcgtcagtaactttt
gatatggagataaccattgaaaaaggacgtggctatgttcctgcagaggaaaacgcaaat
ccgaatgcagcgataggagttatcgcaacagatgcaatttttacacctatcaaaaatgtc
aagtattctattgaaaattaccgcgttgaacaaaaaactgattatgaaaagttagttttt
gaaatcaaaacagatgggtctatacatccaagacaagccttgacagaggctgcaaaaacg
ctgatacatcattttatgttattctctgatgagagaattacgttggaatcagatgagatt
gcacagactgatgcatacgatgaggaatcgttgcatatgcgtcagttattgaaaactaga
ttggtagatatggacttgtcagttcgagcattaaattgcttgaaagctgccgaagtggat
actttgggagatttggtttctttcaataaagctgatttgatgaaattcagaaattttggt
aaaaaatcacttacagaacttgatgaattggttgccaataaaggtttgacatttggaatg
gatttgtcaaagtataagttagatagagattaa
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