Capnocytophaga cynodegmi: CGC48_08980
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Entry
CGC48_08980 CDS
T05499
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ccyn
Capnocytophaga cynodegmi
Pathway
ccyn03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ccyn00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CGC48_08980 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccyn03021
]
CGC48_08980 (rpoC)
03400 DNA repair and recombination proteins [BR:
ccyn03400
]
CGC48_08980 (rpoC)
Enzymes [BR:
ccyn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CGC48_08980 (rpoC)
Transcription machinery [BR:
ccyn03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CGC48_08980 (rpoC)
DNA repair and recombination proteins [BR:
ccyn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CGC48_08980 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
ATA68745
UniProt:
A0A250EAH9
LinkDB
All DBs
Position
2008280..2012566
Genome browser
AA seq
1428 aa
AA seq
DB search
MARDKNTTVSKFDKISIGLASPESILAASRGEVIKPETINYRTHKPERDGLFCERIFGPV
KDYECACGKYKRIRYKGIVCDRCGVEVTEKKVRRDRVGHINLVVPIAHIWYFRSLPNKIG
YLLGLPSKKLDMIIYYERYVVIQPGIAKGPDGEDIQPLDFLTEEEYLNIMESLPVENQYL
EDTDPNKFVAKMGAECLLDLLQRLDLDELSYDLRHKANNESSKQRKTEALKRLQVVEAFR
EAKNNRENKPEWMIMKVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLME
IKAPEVILRNEKRMLQESVDSLFDNTRKSSAVKTESNRPLKSLSDSLKGKQGRFRQNLLG
KRVDYSARSVIVVGPELKLYECGLPKNMAAELYKPFVIRKLIERGIVKTVKSAKKIIDKK
EPVVWDILENVIKGHPVLLNRAPTLHRLGIQAFQPKLIEGKAIQLHPLVCTAFNADFDGD
QMAVHLPLGPEAILEAQLLMLASHNILNPANGSPITVPSQDMVLGLYYMTKGRRSIPEYP
IKGEGMTFYSAEEVNIAYNEKKLSLNAFIKVRVRDLDEEGNKVYKVLETTTGRVLFNEVV
PAEAGYINEVLTKKSLRDIIGHILKSTSIPVTADFLDKIKNMGYKFAFQGGLSFSLGDII
IPKEKADMIAEANGLVDGIMMNYNMGLITNNERYNQVIDVWTSTNAQLTELAMKRISTDQ
QGFNSVYMMLDSGARGSKEQIRQLTGMRGLMAKPKKSTVGGGEIIENPILSNFKEGLSIL
EYFISTHGARKGLADTALKTADAGYLTRRLVDVSQDVIINTEDCGTLRGVEVRALKKNEE
VVETLGERILGRVSLHDVYNPLTEELLVKSGEEITEKIVAKINEAPIEMVEVRSALTCEA
KHGICAKCYGRNLSTGKMVQTGEAVGVVAAQSIGEPGTQLTLRTFHAGGVAGNVSEENKA
EARFSGILEIDDLRAVKGKDNEGNPISVVVRSSELKVVDPNTGMVLQTHDIPYGASIFVK
DKQEVTKGTLLFQWDPYNAVIISEFSGKIAYEGIEQGVTYQIEIDEQTGFQEKVIVESRN
KKLVPTLLILDKNGEVLRSYTLPVGAHIMVENASKVEEGKVLVKIPRNSAKSGDITGGLP
RVTELFEARNPSNPAIVSEIDGVVSFGKIKRGNKEVIVTSRLGEERKYLVKLSSQILVQE
NDYVRAGKPLSDGSVTPDDILKIKGPSAVQQYLVNEVQEVYRLQGVKINDKHFEVIVRQM
MRKVEIQDPGDTLFLEGQLVHKDDFIEENDKLFGKKIVEDVGDSENLKAGQIVSLRQLRD
ENSLLKRADKNLVIARDVIPATATPVLQGITRASLQTKSFISAASFQETTKVLNEAAVSG
KVDTLDGLKENVIVGHRIPAGTGLKRYEKILVGSKAELENAGEKKKSK
NT seq
4287 nt
NT seq
+upstream
nt +downstream
nt
atggcaagagataaaaatacaactgtttcaaaattcgataaaatttctatcggattggct
tcgccagagtcaattctagcggcttctcgtggagaggttatcaaacccgaaaccatcaat
tatcgtacccacaaacctgagcgagatggtttattctgtgagcgtatttttggtccagta
aaggattatgaatgtgcttgtggaaaatacaaacgtatccgttataagggcattgtttgt
gatagatgtggtgtggaagtaactgagaaaaaggtgcgtcgtgatagagtaggccacatc
aatttggtagtaccaattgctcatatttggtatttccgctcattgcctaacaaaatagga
tacctattggggttgccatctaaaaagttggatatgattatttactacgaacgttacgta
gttatccagccaggtatcgccaaaggacctgatggagaggatattcaaccattggatttt
cttacagaagaagaatatcttaatataatggagtcacttcctgttgagaatcagtattta
gaagataccgatcctaacaaatttgtggcaaaaatgggagcagagtgtttgttagatttg
ctccagcgattagatttagatgaactttcgtatgatttgcgtcacaaagcgaataacgaa
agctcaaaacaacgtaaaacagaggctctcaaacgtttacaagtagtagaagctttccgt
gaagcgaaaaataatcgtgaaaataaacctgaatggatgataatgaaggtgattccggta
attccgcctgaattacgtccgttagttccgttagacggagggcgttttgctacttccgat
ttgaacgatttgtatcgtcgtgttattatccgtaataatcgtttgaaacgacttatggaa
atcaaagctccagaggtaatcttacgtaacgaaaaacgtatgttacaagagtcagtagat
tcgttgtttgacaatacgcgtaaatcttcagctgtaaaaactgaatcaaatcgtccgttg
aaatcactttctgattccctaaaagggaaacaaggacgtttccgtcagaacttgcttgga
aaacgtgtggattactcagcacgttcggtgattgttgtaggtcctgaattgaaattgtac
gagtgtgggcttcctaaaaatatggcggctgagctttacaagcctttcgttattcgtaag
ttgattgaaagaggaattgtaaaaacggttaaatctgccaaaaaaattattgataaaaaa
gaacctgtagtttgggatattttggagaatgtgattaagggtcacccagttcttctgaat
cgtgccccaacattgcaccgtttggggatccaagctttccaacctaaattgattgaaggt
aaggcaattcagttgcacccattggtgtgtacagcgtttaatgcggactttgatggtgac
cagatggcggtgcatttgcctttgggaccagaggctattttggaagcccaacttttgatg
ttggcatcacataatattttgaatcctgctaatggttcgccaatcactgtaccttcacaa
gatatggttttggggctttattatatgaccaaaggaagacgttctatacctgaatatcca
attaaaggagagggaatgactttctactcagcggaggaagtaaatattgcttacaacgag
aaaaaattaagtttgaatgcctttatcaaagtgcgtgttcgtgacttagatgaagaaggc
aataaagtgtataaagtattggaaaccactacgggtagagttcttttcaacgaagtggtt
ccagcagaggcaggatacatcaatgaagtattgactaaaaagtcattgcgtgatatcatc
ggacatattttgaaatctacaagcattcctgttacggcagatttcttggataagattaaa
aatatgggatacaaatttgctttccaaggaggattgtcattcagtttgggcgacattatt
attccgaaagaaaaagctgatatgattgctgaagccaatggtttggttgacggaattatg
atgaactacaatatgggtcttattaccaacaatgagcgttataatcaggtgattgatgtt
tggacatcaaccaatgctcagcttacagagttggcaatgaaacgtattagtactgaccaa
caaggatttaactctgtgtatatgatgttagattctggtgcgaggggttcaaaagagcaa
attcgtcagcttacaggtatgcgtggacttatggcaaaacctaaaaaatcgacagtaggt
gggggagaaatcatcgaaaacccgattttgtcgaactttaaagaaggtttgtcaatcttg
gagtatttcatttcaacacacggtgctcgtaaaggtcttgccgataccgctttgaagacc
gccgatgcgggatatttaacacgtcgtttagtagacgtttcacaagatgttatcatcaac
acagaagattgtggaacattacgcggtgtagaagttcgtgctttgaagaaaaatgaggaa
gttgttgaaactcttggagaacgtatcttaggacgcgtgtcgcttcacgatgtttataat
ccacttacagaagaattgcttgttaagtcaggagaggaaattactgaaaaaatagttgct
aaaattaatgaggctcctattgaaatggttgaagtacgttctgctcttacttgtgaggct
aaacacggaatttgtgctaaatgttacggacgaaatctttctactggaaaaatggttcaa
acaggtgaagctgtcggagttgtggctgcacaatctatcggagagcctggtacacagctt
acgcttcgtactttccacgcaggaggggttgctggtaacgtttctgaagaaaataaggca
gaagcacgttttagtggtatcctcgaaatagatgatttacgtgccgtaaaaggtaaggac
aacgaaggaaatccaattagtgtagttgtgcgttcttctgaattgaaagtagttgatcca
aatacaggaatggtgttacaaacacacgatattccgtacggagcgagtatctttgtgaaa
gataaacaagaagttaccaaagggactttgcttttccaatgggatccgtacaatgccgta
atcatttctgagttctctggaaaaattgcttatgaaggtattgagcaaggagttacttat
cagattgaaattgatgagcaaacaggcttccaagaaaaagtaattgtggaatcacgtaat
aaaaaattggttccaacattattgattttggataagaatggtgaggtattacgttcttat
actttaccagttggagctcacattatggttgagaatgcaagtaaggtggaagaaggtaaa
gtgttggtgaaaattccgcgtaattccgcaaaatctggggatattacgggaggtttacct
cgagttacagagcttttcgaagcacgtaacccttcaaatccagcgattgtttctgaaatt
gatggtgtagtttcgtttggaaaaattaaacgtggaaataaagaagttattgttacctca
cgtttgggagaagagcgtaagtatttagtgaaactttcaagccaaattttggtacaggag
aatgactacgtacgtgctggtaaaccactttctgatgggtctgtaacaccagatgatatt
ctgaagattaaaggaccatcagctgttcagcagtatttggtaaatgaggttcaagaagtg
tatcgtttgcaaggtgtaaaaatcaatgataagcattttgaggtaatcgttcgtcaaatg
atgcgtaaagttgaaattcaagatccaggggatactttattccttgaaggtcagcttgtt
cataaagatgatttcattgaggaaaatgataagttatttggcaagaagattgttgaagat
gttggtgattctgagaatttgaaagctggacaaattgtttctctacgccagttacgtgat
gaaaattcactacttaaacgtgccgataaaaatttggtaattgctcgtgatgttattcct
gcaacggcaacacctgtgttacaaggtattacaagagcttctttgcaaactaaatcgttc
atttcagcggcatcattccaagaaactacaaaagtgttaaacgaggcagctgtaagcgga
aaagtagatacacttgatggcttgaaagagaatgttattgtaggtcacagaattcctgca
ggtacaggtttaaaacgttatgaaaaaattcttgtgggctcaaaagcagaattagaaaac
gctggtgaaaagaaaaaatcaaaatag
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