Capnocytophaga cynodegmi: CGC48_09890
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Entry
CGC48_09890 CDS
T05499
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ccyn
Capnocytophaga cynodegmi
Pathway
ccyn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccyn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CGC48_09890
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccyn03019
]
CGC48_09890
03009 Ribosome biogenesis [BR:
ccyn03009
]
CGC48_09890
Enzymes [BR:
ccyn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CGC48_09890
Messenger RNA biogenesis [BR:
ccyn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CGC48_09890
Ribosome biogenesis [BR:
ccyn03009
]
Prokaryotic type
rRNA helicases
CGC48_09890
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
ParBc
CoA_binding_2
DUF6591
RecG_N
AAA_22
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
ATA68900
UniProt:
A0A250E7F6
LinkDB
All DBs
Position
complement(2234393..2236159)
Genome browser
AA seq
588 aa
AA seq
DB search
MNSFKQLGLSEPILKAVADMGFENPSEIQQKAIPSLLSENIDMVALAQTGTGKTAAFGFP
LLQKIDPENRETQGLILSPTRELCLQIASELKLYSKYIPKVNVVAIYGGASIEEQARNVK
KGAQIIVATPGRMQDMIRRNFVNISNINFCILDEADEMLNMGFYEDITSILSHTPDTKNT
WLFSATMPNEVAKIARQFMYKPLEITVGARNQASNSIRHEFYVVNGRHRYEALKRLADAN
PDIFSVVFCRTKKDTQSVAEKLIEDGYNAAALHGDLSQNQRDLVMKAFRAKQIQMLIATD
VAARGIDVDDITHVIHYQLPDEIETYTHRSGRTGRAGKSGVSMVIIPKSEVKKIKAIEKI
IQQPFELKKLPNGIEICEIQLYHLANNIKNITVDQAIEDYLPAINDVLQGVDREELIKKM
VAVEFNRFFNYYKNSKDLNNSEEKDFNSNDNEVRFFINVGERDGYDWKTLKDFLKATLDL
GKDDIFKVDVKNSFSFFNTEAENTDLVMNIFNDFQLDGRFINVEISSKQERGRERGRKSQ
KEKNRDSKGRKRNEKARNSSEKQSSKGKREQKTSQAFEKAFNKRKKRK
NT seq
1767 nt
NT seq
+upstream
nt +downstream
nt
atgaattcatttaaacaattagggcttagtgaacctatactcaaggccgtagctgatatg
ggctttgaaaatccttctgaaatacaacaaaaagcaatcccttcattactttctgagaac
attgatatggttgctttggcacaaacaggaacaggaaaaaccgccgcattcggctttcct
cttttacaaaaaatagacccagaaaatcgtgaaacacaaggacttattctttctcctaca
cgtgaactatgtttgcagatagcatcagaattaaaactttattcaaaatacatcccgaaa
gtaaatgtagttgctatttatggtggtgcaagcattgaagaacaggctcgtaatgtaaaa
aaaggagcccaaattatcgttgctactcccggacgtatgcaagatatgattcgcagaaat
tttgtaaacatctcaaatataaacttttgcattttagatgaagccgatgaaatgctaaat
atgggtttttatgaagatatcacttccattttgtcacatactccagatacgaaaaacacg
tggcttttctcagctacaatgcccaatgaggtagccaaaattgctcgtcagtttatgtac
aaacctctagaaattacagtaggagcaagaaaccaagcctcgaatagtatacgtcacgag
ttctatgttgtaaatggacgacacagatatgaagccctaaaacgattggctgatgcaaat
cctgatattttttctgttgttttttgtagaacaaagaaagatacacaatctgttgcagaa
aaattgattgaagacggatataatgcagcagcactacacggtgatttgagtcaaaaccaa
cgtgatttagtaatgaaagcattccgtgccaaacaaatacaaatgctaatagctacagat
gtagcggcacgaggaattgatgttgatgatataactcacgttattcattatcagctacct
gatgaaatcgaaacatacactcacagaagcggacgcacgggaagagcgggtaaatcgggc
gtgtcgatggttattattcctaaaagtgaagttaaaaaaataaaagccattgaaaaaatc
attcagcaaccttttgaactgaaaaaactaccaaatggaattgaaatctgtgaaattcaa
ctatatcatttggctaataatatcaaaaatattactgtagatcaagctattgaggattat
ttacctgcaataaatgatgttcttcaaggggttgacagagaagaacttattaaaaaaatg
gttgcagtggaatttaaccgattcttcaactactataaaaattctaaggatttgaataac
tcagaagaaaaagactttaattcgaatgacaatgaagtccgattcttcataaacgtagga
gaaagagatggttatgattggaaaactttaaaagatttcctaaaagcaactcttgattta
ggaaaagatgatattttcaaagtagacgtaaaaaatagtttctctttctttaatactgaa
gcagaaaatactgatttggtgatgaatatatttaatgattttcaattagatggtcgcttt
atcaacgtagaaatttcatcaaaacaagaaagaggaagagaacgaggtagaaaaagtcag
aaagaaaaaaatagagactcaaaaggcagaaaacgcaatgaaaaagctcgtaattcttct
gaaaaacaatcttcaaaaggaaaaagggagcaaaaaacctcacaagcttttgaaaaagct
ttcaataaaagaaaaaaacgaaaataa
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