Corynebacterium cystitidis: SAMEA4530656_0438
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Entry
SAMEA4530656_0438 CDS
T07131
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
ccys
Corynebacterium cystitidis
Pathway
ccys03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccys00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SAMEA4530656_0438 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccys03019
]
SAMEA4530656_0438 (rne)
03009 Ribosome biogenesis [BR:
ccys03009
]
SAMEA4530656_0438 (rne)
Enzymes [BR:
ccys01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
SAMEA4530656_0438 (rne)
Messenger RNA biogenesis [BR:
ccys03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SAMEA4530656_0438 (rne)
Ribosome biogenesis [BR:
ccys03009
]
Prokaryotic type
rRNA processing factors
SAMEA4530656_0438 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
IF2_N
S1
Alg17C_C
Motif
Other DBs
NCBI-ProteinID:
SNV66929
LinkDB
All DBs
Position
1:450263..453466
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AA seq
1067 aa
AA seq
DB search
MADTSENTEQTDNSGTTNTAGNPDQPAKRRATKKASRKASRKATTNKEGQKRSGKSAKKT
AKKTAKKTAKKTAKKTAKKTARKATQTQRGTSATTTTSALQSFDRSQLGDKTRVFTLAKQ
LGLPSKDLVIALNGMGLVKVAQSSLTRAEAEQLVDVLQGTDADPNVDTTVPDDVAAEAGE
KIRDRVRKDVANEINQIQNKVDADLASSKETDGATDDELLAEIIPDVTPPPAEESAVDAH
APVFKAPSRSDRRRARRTSSSTGAEQLDGNRAGDSGPDKDQGNHQGKDESRDEAPEAEVD
VIDEPRAIKGSSRLEAQRRRRSEKRAEGRKRSRIVSEAEFLARRESVERAMIVRERERHD
HHGRITQVGVLEDGLLVEHFVTSEENTSMIGNIYLGRVQNVLPSMEAAFIDIGQGRNGVL
YAGEVDWKAAGLGGRSRRIENALKSGDQVVVQVSKDPIGQKGARLTTQISLAGRYLVYVP
GGRSAGISRKLPAPERSRLKEILNNVVPGKGGAIIRTAAEGVSEEAIGADVNRLHNQWEA
IQEQAAKEKASKGAKPVTLYEEPNMLVKVVRDLFNEDFTELVVDGEKSWNVVSNYVSKVA
PDLEDRLVKFDRDEHDGADAFAEHRVDEQLEKALSRKVWLPSGGSLVIDRTEAMTVIDVN
TGKFTGSGGSLEETVTSNNLEAAEEIVRQMRLRDIGGMIIVDFIDMILPENQELVLRRLK
EALGRDRTRHQVSEVTSLGLVQMTRKRLGTGLLETFSHECEACGGRGIILSDDPVEHTFE
HEPRHRRKPARKAGEHPAAQAMRARDDDKSFEGVDDTSGAEAGDNDTGDAADQPRSSRRR
RRSNRDFEELADSVIGTKTDADTDTDNGDGEEADSEQLEESARRASRRRGRRGRGRGRGR
QPEQSDNLVDNVDDIDDIDDIDDTDDPAVADDSAGTIGEGEKTYEEAVAEFEKSPRRKRR
TRGNSRSDHRPRREDFQQPVEESTSQKTEVVVEKRSSDTSGRSRRGRRRAVRRARTSNLG
PRKEHSTRNRDVDKAESAKAQELGADSSKTSSPRGRGRRRAVRRSMR
NT seq
3204 nt
NT seq
+upstream
nt +downstream
nt
gtggctgataccagcgaaaataccgaacaaaccgataattctggcacaacaaacacagcc
ggaaaccctgaccagcccgcaaagaggagggctaccaagaaggccagccggaaggcctcg
cgtaaggctactaccaacaaagaaggccagaaaaggtccggtaagtcagcgaagaaaaca
gcgaaaaagaccgcgaagaaaactgcgaagaaaacagcgaaaaagaccgcgaaaaagact
gcgagaaaggcaacgcaaacacagagaggcactagcgcgactaccactacgagtgcgctg
caaagcttcgaccgctctcaacttggcgacaagacgcgtgtgttcacgctggcaaaacag
ctgggtctgccgtcgaaagacctggttatagccctcaatgggatgggtctggtcaaagtt
gctcagtcttcgctgacccgtgctgaggctgaacagctcgtcgatgtgctccagggtacc
gacgcggatcccaacgtggacacaaccgtgcccgacgacgtcgccgccgaagcaggcgag
aagattcgcgaccgcgtccgtaaggacgtggccaatgagatcaaccaaatccaaaacaaa
gttgatgcagacctcgcctcatcaaaggaaacggacggggccaccgacgatgagctattg
gccgaaataattcctgatgtcacccctccaccggcagaagagtccgcagtggacgcgcac
gcgcccgtcttcaaggctccgtcgcgctcagaccgccgtcgcgcgcgtcgcacgagctcc
agcaccggtgctgagcaactggacggaaatcgcgctggcgactcgggtcccgacaaggac
cagggcaaccaccagggcaaagacgaaagccgcgacgaggcgcccgaggcagaagttgat
gttatcgacgagccacgggccatcaagggctcctcgcgcctagaggcacagcgccgtcga
cgcagcgagaagcgtgcggaggggcgcaagcgttcccgcatcgtgagcgaggcggaattt
ctggcgcgtcgtgaatctgtcgagcgcgccatgattgtgcgcgaacgtgaacgccacgac
catcacggacgcatcactcaggtgggagtactcgaggacgggctgttggtggagcatttt
gtcaccagcgaggaaaacacctcaatgattggcaatatctacctcgggcgcgtacaaaac
gtgttgccgagcatggaagcggcgtttattgatatcggccagggccgcaacggagtgctc
tatgctggtgaggttgactggaaagccgctggccttggcggacggtcgcgtcgcatcgaa
aacgcactgaagtccggcgaccaggtggttgtgcaggtctccaaagacccaatcgggcag
aaaggcgcgcgcttaacgacgcaaatctccctggctggccgttaccttgtgtatgtaccg
ggtggccgcagtgctggtatttcccgcaagctgccagcacctgaacgcagccgtttgaag
gaaatcctcaacaacgttgtgcccggaaagggcggtgccatcattcgtaccgccgccgaa
ggggtgtcggaagaggccatcggcgctgacgtcaaccgtttgcacaaccaatgggaagcg
attcaggaacaggcggcgaaggaaaaggcatcgaagggtgctaagcctgtcaccctgtac
gaagagccaaacatgctggtcaaggtcgtacgcgacttgttcaatgaggactttacagaa
cttgttgttgacggcgagaagtcatggaacgtggtctccaattacgtctcgaaggtcgca
ccggatctcgaggaccgtttggtcaagtttgatcgcgatgaacacgacggggcggacgct
ttcgcggagcaccgcgtcgatgagcagctggagaaggcactgagccggaaggtgtggctg
ccatctggtggctcgctggtcattgaccgcactgaggccatgacggtgatcgacgtgaat
accggaaagttcaccggctctggtggttctctcgaagagaccgttacgtctaataacttg
gaggccgccgaagagatcgtgcgacagatgcgtctgcgtgacatcggtggcatgatcatc
gttgatttcattgatatgatcctgcccgagaaccaggaactcgtcctgcgtcgcctgaag
gaggcgctgggccgcgaccgcacccgccaccaagtttctgaggtcacctcgcttggcttg
gtgcaaatgacgcgtaagcgcctgggtaccggccttttggaaacgttctcgcacgagtgt
gaggcgtgtggtggacgcggcatcatcctgagtgatgatccggtcgagcataccttcgag
cacgagcctcgacaccgccgtaagccagcgcgcaaggcaggggagcatcccgcagctcag
gccatgcgtgcgcgtgacgacgacaagtcctttgagggcgttgacgacacctcgggggct
gaggctggtgacaatgacaccggtgacgcagccgatcagccacgatcatcgcgtcgccgc
aggcggagcaaccgcgactttgaagaacttgcagattctgtgatcggcaccaagactgac
gctgatactgatactgataatggtgacggcgaagaggcagattctgagcagctcgaggag
tcggcccgccgcgcgtcgcgacgccgcggacgccgtggccgcggacgtggtcggggccgc
caaccagaacagtccgacaatctcgtggacaacgttgacgatattgacgatattgacgat
attgacgatactgacgatccagcagtggcagacgacagtgcaggcactatcggagaaggt
gagaaaacctacgaggaagcagtcgccgagtttgagaagtctccacgccggaagcgccgc
acccgtgggaactcgcggtcagatcaccgcccacgccgtgaagatttccaacagccggtg
gaagaatccacgtcgcagaagacagaggtggtcgtcgaaaagcgatcaagtgacacttca
ggccgttcgcgacgcgggcggaggcgagcagtgcgccgcgcccggacatcgaacttgggt
ccgcggaaagagcattccacgcgcaaccgggatgtcgacaaagcggagtccgcgaaggct
caagagttgggggcagattcgtcgaagacttcctcgccgcgtggccggggacggcgtcga
gcggtccgccggagcatgcgttag
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