Corynebacterium cystitidis: SAMEA4530656_1516
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Entry
SAMEA4530656_1516 CDS
T07131
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ccys
Corynebacterium cystitidis
Pathway
ccys03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ccys00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SAMEA4530656_1516 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ccys03400
]
SAMEA4530656_1516 (mfd)
Enzymes [BR:
ccys01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SAMEA4530656_1516 (mfd)
DNA repair and recombination proteins [BR:
ccys03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
SAMEA4530656_1516 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
AAA_22
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
SNV80670
LinkDB
All DBs
Position
1:complement(1571298..1574936)
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AA seq
1212 aa
AA seq
DB search
MTDNLPMLAGLLTKAASDPKLKGLVSQLHEEAGTQALHITGIDQVRPWAVGALARKTPVL
AVTATSHEAEDLTAELAAMLGEDKVAKFPAFETLPHERLSPGADVVGTRFEVLHRLPNLQ
VVVTSARGFCQPFLPAIEPIVVEQDQERDFTKLVNALTTFAYKHVDMVAARGEFATRGGI
IDVFPTTAEHPVRLEFWGDEITDLRSFAVADQRTIEEITRVEVFPARQLLIDDTVAARAD
ELSREFPTNPTLVQLLTRISEHTHADGMEALMPALTDQQFQVLPDLMPEGSVVLVTSPEK
VRTRIADLEQTDQEFLEAGWEAAAMGAEGPVAVEGLDLSATSYRSFESLKVSAEKAGARW
WTFAPPGMFAADEADTLPLEFTPAPAPRGEAKEIEALMAQLKKHVADGGAAAFIAPAKGT
VERMADRFRENGISARIASAGLEPIDGKITLYQAVSHAGLIFPGTHIPLVVVTETDVTGN
RVGDIAGAKRRKAKRRNRVDPLALQPGDYVVHETHGIARFVKMAERAITSGEETSRREYI
VLEYAPSKRGQPNDQLWVPMESLDLLSKYSGGESPTLSKMGGSDWKNTKKKARAAVREIA
GELVQLYAKRVSAPGHAFAADSPWQHEMEDAFPFVETEDQMVAIEAVKEDMEKPVPMDRV
IVGDVGFGKTEVAVRAAFKAVQDGAQVAVLVPTTLLAQQHYSTFATRMAGFGVEIRELSR
FTSAADSKKILKGLADGSVDIVIGTHRLLQTGVQWKNLGLIVVDEEQRFGVEHKEHIKAL
KAHVDVLTMTATPIPRTLEMSMTGIREMTSITTPPEDRHPVLTYVGPYEEKQVAASIRRE
LLRDGQVFFIHNKVSDIEKKARELRELVPEARIVVAHGQMSEQVLEQTVQGFWDREFDVL
VCTTIVETGLDIANANTLIVENAQNMGLSQLHQLRGRVGRSRERGYAYFLYPKGATLTET
SYDRLATIAQNNDLGAGMAVAQKDLEMRGAGNVLGAEQSGHIAGVGFDLYVRLVGEAVAT
YKALATGEVVDATDQGPKEIRIDLPVDAHIPETYVNSERLRLEQYRKIAETRDDDQLTTI
IEEMTDRFGPLPEEVQRLMAVARVRHQARAAGVANITVQGNRIKLHPVDLPDSKQVRLKR
LYPGSAYRAAAKAVQVPFPKAGKGINQPGLRDTALLQWVADFLAGMFDVPQVPETGGETA
PQREKSVFSVSE
NT seq
3639 nt
NT seq
+upstream
nt +downstream
nt
atgacagacaaccttccgatgttggcggggctgctcaccaaagcagcgtccgacccgaaa
ctaaaaggtctcgtctcccaacttcacgaggaagctggaacccaggctttgcacatcacg
ggcattgatcaggttcgcccctgggctgtcggggcgctggcgcggaaaaccccggtgcta
gccgtcaccgcaaccagccacgaagccgaggatctcaccgctgagcttgcggcaatgctc
ggtgaggataaagtggccaagtttcccgcttttgagactctcccgcatgagcgcctcagc
ccgggagcagacgtcgtcggcacgcgttttgaggttctgcaccggctgccaaacttgcaa
gtcgtggtcacgtcggcgcgcggattctgccagccgttcctgcccgcgatagagccgatc
gtggtggaacaagaccaggagcgcgacttcacaaagcttgtcaacgccctgaccaccttt
gcctacaagcacgtggacatggtggctgcacgcggagaatttgccacacgcggcggcatc
atcgacgtgttccccaccaccgccgaacacccggtccgcctcgagttctggggcgacgag
atcaccgacctgcgcagcttcgccgtagccgatcagcgcaccatcgaggagattacccgg
gtagaagtattcccggcccgccaattgctgatcgacgacaccgtagccgcgcgtgccgac
gaactgtcgcgtgagtttcccaccaaccccacattggtgcaattactcacccgcatctcc
gagcacacacacgccgacggaatggaagcgctgatgcctgcgctgacagaccagcagttc
caggtgctgcccgatctgatgccggaaggctccgtagtgctggtaaccagcccagaaaag
gtgcgcacccgcattgctgacctggagcagaccgaccaggaattcttggaggccgggtgg
gaggccgcggccatgggcgccgaaggaccggtcgcagtcgaagggctggacctgtctgct
acctcgtaccgctcatttgaatcgctcaaggtctctgccgagaaagctggcgcgcggtgg
tggacatttgccccacccggcatgttcgcagccgacgaggccgacacactgccgctcgag
ttcaccccggccccggcgccgcgcggcgaggctaaagagattgaagcgctcatggcccag
ctgaaaaagcatgtggccgacgggggagcggctgcctttatcgctcccgccaagggcacc
gtggaacgcatggcggacagattccgcgaaaacggtatctcggcgcgcatcgccagcgcg
gggctagagcctatcgacggcaagatcaccctctaccaggccgtcagccacgccggcctg
atcttccccggcacccacatccccctggtcgtggtcacagaaacagatgtcaccggtaac
cgggtcggagatattgcaggagcgaagcgtcgaaaagcgaaaaggcgcaaccgcgtcgat
cctttagcgctgcagcccggcgactacgtggtgcatgaaacccacgggatcgcccgcttc
gtaaaaatggcggaacgggcgattaccagcggggaagagaccagccggcgcgaatacatc
gtgttggaatacgcgccgagcaaacgcgggcagccaaatgaccagctgtgggtgcccatg
gagtctttagacctgctgtcaaaatactccggcggcgaatcacccaccctgtccaagatg
ggcggttctgactggaaaaacacgaagaaaaaggcgcgcgccgccgtccgcgaaatcgcc
ggtgaactggtgcaactctacgctaagcgggtcagcgcgccgggccacgcattcgcggcg
gattcgccgtggcagcacgaaatggaagacgccttcccgttcgtggagacggaggaccag
atggtggctattgaagccgtcaaagaagacatggaaaagccggtgcccatggaccgcgtg
atcgtgggtgatgtgggcttcggcaaaactgaggtagctgtgcgcgcagctttcaaggct
gtccaagacggggcgcaggtggcggtgctcgtgccgacgacacttcttgcccagcaacac
tattccaccttcgccacccgcatggctggcttcggtgtggagatccgcgagctgtcgcgt
tttacgtccgctgctgattcgaagaagatcttaaaggggcttgccgacggctccgtggac
atcgtgatcggtactcaccgcctgctacaaactggtgtgcaatggaagaacctgggcctg
atcgtggtggatgaagagcagcgcttcggtgtggagcacaaggagcacatcaaagcgctt
aaggcgcacgtggatgtgttgaccatgaccgcaacaccaattccgcgcaccctcgaaatg
agcatgaccgggatccgcgaaatgacctccatcaccaccccgccagaagaccgccacccg
gtattgacctatgtgggtccgtatgaagaaaagcaagtggcggcgtcgataaggcgcgaa
cttttgcgcgacggccaggtctttttcatccacaacaaggtcagtgacattgagaagaag
gcgcgtgagctgcgcgagcttgtgccggaggcgcgcatcgtggtcgctcacgggcagatg
agtgagcaggtactcgagcaaacagtgcaggggttctgggaccgcgaatttgacgtgttg
gtgtgcacaacaatcgtagaaacagggttggatatagccaacgcgaacacgttgatcgtc
gaaaatgcgcagaatatggggcttagccagctgcaccagctacgcgggcgtgtcggacgt
tcgcgcgagcgtggctatgcctatttcctgtatccgaagggtgccacgctcaccgagact
agctacgaccgtctggccaccatcgcccagaacaatgatttgggtgccgggatggcggtg
gcgcaaaaggacttggaaatgcgcggagccggcaatgtgctgggtgcggaacagtccggc
cacatcgccggtgttggttttgatctgtatgtgcgcttggtgggagaagccgttgctacc
tacaaggcgctcgccaccggcgaagtggttgatgccaccgaccaaggcccgaaagaaatc
cgcatcgacctgcctgtcgacgcgcacatccccgagacctacgtcaactctgaacgcttg
cggcttgagcagtaccgcaagatcgcagagacgcgtgacgacgaccaactgaccaccatc
atcgaggagatgaccgaccgcttcggcccgttgccggaggaagttcagcgcttgatggct
gtggcccgggtgcgccatcaagcccgtgccgctggcgtggcaaatattacggtgcagggc
aaccgcatcaagctgcacccggtagacctgccagattcgaaacaagtacggctgaagcgt
ctgtacccaggttcggcgtaccgcgcggctgcgaaggctgtgcaagtaccattccctaag
gcaggcaagggcatcaaccaacccggtctgcgtgataccgccctgctgcagtgggtcgcc
gacttcctggctgggatgttcgatgtgccacaggtgcctgagactggcggtgagactgcc
ccgcaacgagaaaagagcgtgttttcggtcagcgagtaa
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