Corynebacterium cystitidis: SAMEA4530656_2055
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Entry
SAMEA4530656_2055 CDS
T07131
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ccys
Corynebacterium cystitidis
Pathway
ccys03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ccys00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SAMEA4530656_2055 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccys03021
]
SAMEA4530656_2055 (rpoC)
03400 DNA repair and recombination proteins [BR:
ccys03400
]
SAMEA4530656_2055 (rpoC)
Enzymes [BR:
ccys01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SAMEA4530656_2055 (rpoC)
Transcription machinery [BR:
ccys03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SAMEA4530656_2055 (rpoC)
DNA repair and recombination proteins [BR:
ccys03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SAMEA4530656_2055 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
DUF496
Motif
Other DBs
NCBI-ProteinID:
SNV86736
LinkDB
All DBs
Position
1:complement(2108124..2112125)
Genome browser
AA seq
1333 aa
AA seq
DB search
MFDVNLFDELRIGLATADDIRRWSHGEVKKPETINYRTLKPEKDGLFCERIFGPTRDWEC
ACGKYKRVRYKGIICERCGVEVTKSKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLERIIYFAANIITSVDEEARHADMSTLEAEMILEKREVEQDVESDIAERAQKLEED
LAALEAEGAKADARNKVQKAADKEMQNMRDAGEREVERLDEIWQTFVKLAPKQMIIDEHL
YEELVDRYEDYFTGGMGAEALQTLIRNFDLDAEAEELNHIIAEGKGQKKQRALKRLKVVA
AFQRSGNDPAGMILDAIPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRMIEL
GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
RVDYSGRSVIIVGPQLKLHECGLPKLMALELFKPFVMKRLVDNDYAQNIKSAKRMVERQR
PEVWDVLEEAISEHPVLLNRAPTLHRLGIQAFEPKLVEGKAIQLHPLACEAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSSNNILSPASGKPLALPRLDMVTGLYFLTMKKAEDEIGGE
GAYAPADDSGPARGVYSSHREAIMAMDRGALGLQAPIKVRIDHLRPTPEIEAEQFPDGWE
KGQSWMMDTTVGRIQFNELLPYNFPYQEGAMVRKGGGDDKVLLGDIISEMVEKYPMITVA
QTLDKLKDAGFYWATRSGVTIAMSDVLVLPNKEDILEQYEKEAEEIERKFWEKGALTEEN
RYDRLVELWQKATNQVGQAVEDLYPDDNPIPMIVKSGAAGNMRQIWTLAGMKGMVVNSRG
EYITRPIKTSFREGLSVLEYFNNSHGSRKGLADTALRTADSGYLTRRLVDVAQDVIVRED
DCGTRQGVRVRVAVKSGDKFVRHDLVETSVSGRVTATDITDADGNVVVEAGTNLTEALID
KIVEAGHEKIKVRSVLTCQTPTGVCAKCYGKSMASGHLVDIGEAVGIVAAQSIGEPGTQL
TMRTFHQGGVGGDITGGLPRVQELFEARVPKNRAPIASVAGTVSLSDEGNFWTLTITPDD
GSDDVVYEKLSKRQGLAQVRRPMESNPDAMIERSLREGDHVEVGDRLLRGAADPHDVLEV
LGRRGVEKHLIDEVQAVYRAQGVSIHDKHIEIIIRQMLRRGTVIDAGSTQYLPGTLADLS
EAKQINSGVVAEGGQPAELRSEIMGITKASLATESWLSAASFQETTRVLTDAAINRRSDQ
LIGLKENVIIGKLIPAGTGISRYRNISVKPTEAARSVAYSIPSFGDSIYGDDGYGEFTGA
SVPLDEYGFDQLS
NT seq
4002 nt
NT seq
+upstream
nt +downstream
nt
gtgtttgacgtaaacctcttcgacgagctccgcatcggcctggccaccgccgacgacatc
cgccgctggtcccatggcgaagtcaagaagccggaaactattaattaccgcaccctgaag
ccggagaaggatggcctcttctgtgagcgcatcttcggcccaacccgtgactgggaatgt
gcgtgtggcaagtacaagcgcgtccgttacaagggcatcatctgtgaacgctgtggcgtt
gaggtgaccaagtccaaggtgcgtcgtgagcgcatgggccatatcgagctcgctgctccc
gtgacccatatctggtatttcaagggtgtcccatcccgtttgggttacctgttggacctt
gcaccgaaggacttggagcgcatcatttacttcgcggctaacatcatcaccagtgttgat
gaagaagcccgccatgcagacatgtccacccttgaggcggagatgatcctggaaaagcgc
gaggtggagcaggacgtcgagtccgatatcgctgagcgcgcccagaagctggaagaggac
ctcgcagccctcgaagctgaaggtgcgaaggccgatgcacgcaataaggtgcagaaggcg
gccgacaaggaaatgcagaacatgcgcgatgccggtgagcgtgaggtggaacgcctcgac
gagatctggcagacctttgtgaagctggcaccgaagcagatgatcatcgacgagcacctc
tacgaggaactcgtggaccgctacgaggactacttcaccggtggcatgggtgctgaagcg
ctgcagaccctgatccgcaattttgacctggatgcggaagctgaagagctcaaccacatc
attgctgaaggcaagggtcagaagaagcagcgcgcacttaagcgcctgaaggttgttgct
gcattccaacgctctggcaatgatcctgctggcatgattttggacgcaatccctgtgatt
ccgccagagctgcgcccgatggtgcagcttgacggtggccgcttcgccacgtcggacctc
aatgacttgtaccgtcgcgtgatcaaccgtaataaccgtttgaagcgcatgatcgagctg
ggtgcaccagagatcatcgtgaacaacgagaagcgcatgctgcaggaatctgtcgacgca
ctgttcgataacggccgtcgtggccgccctgttacaggccctggtaaccgtccgctgaag
tctttgtcggacctgttgaagggtaagcagggtcgtttccgccagaacttgctgggtaag
cgtgttgactactctggccgctcggtgattatcgtcggcccgcagctgaagctgcacgag
tgtggtttgccgaagctgatggccctggaactgttcaagccattcgtgatgaagcgcctg
gtcgataacgactacgcgcagaacatcaagtccgccaagcgtatggtggagcgccagcgc
cctgaggtgtgggatgtgcttgaagaggcgatttctgagcacccagtgttgttgaaccgt
gcaccaaccctgcaccgtctgggtattcaggcgttcgagccgaagcttgttgagggtaag
gctattcagctgcacccactggcgtgtgaggcgttcaatgctgacttcgacggtgaccag
atggccgtccacctgccgctttctgcggaggcgcaggcggaggcacgcattcttatgttg
tcctccaacaacattttgtctccagcatccggtaagccgttggctttgccacgcctggac
atggtgactggcctgtacttccttaccatgaagaaggctgaagacgagatcggcggtgaa
ggcgcatacgcgcctgccgacgacagcggcccggcacgtggcgtgtactcctcacaccgc
gaggccatcatggccatggaccgtggcgcgcttggcttgcaggcgccgatcaaggtccgt
atcgatcacttgcgtccaacgccggagattgaagcggagcagttccctgatggttgggag
aagggccagtcgtggatgatggacacgactgtgggccggatccagttcaatgagttgctg
ccgtacaacttcccgtatcaggaaggcgccatggtccgtaagggcggtggcgacgacaag
gtcctgttgggtgacatcatctcagagatggtggagaagtacccaatgattaccgtcgct
cagaccttggacaagctcaaggatgctggtttctactgggccacccgctccggcgtcact
atcgcaatgtctgacgttctagtcctgccgaacaaggaagatatccttgagcagtacgag
aaggaagcagaagagattgagcgcaagttctgggagaagggcgcgctgactgaggaaaac
cgttacgaccgcctcgtggagctgtggcagaaggctacgaaccaggtgggccaggccgtc
gaggacctctacccagacgacaacccaattccgatgatcgtgaagtccggtgcggccggt
aatatgcgtcagatctggaccttggccggaatgaagggcatggttgtgaactcgcgtggt
gagtacattacccgcccgatcaagacctccttccgtgaaggcctgtcagttctggagtac
ttcaacaactcgcatggttcccgtaagggcctagccgataccgccctgcgtactgcggac
tctggctacctcacgcgccgtctcgtcgacgtggcacaggacgttattgttcgcgaggac
gactgtggcacccgccagggtgtgcgcgtccgtgtcgccgtgaagtcgggtgacaaattc
gtacgccatgatttggtggagacctccgtttctggccgcgtgactgcaactgatatcacg
gatgcggacggcaatgtcgtcgttgaggctggcaccaacctaactgaggcgctcatcgac
aagattgttgaggcaggccacgagaagatcaaggtccgctcggtcctgacctgccagacc
ccaaccggtgtgtgcgcaaagtgctacggcaagtccatggcatctggccacctggttgat
atcggcgaggcagtgggcattgtcgcagcacagtcgattggtgagcctggtactcagctg
accatgcgtaccttccaccaaggcggtgtcggtggcgacattactggtggtctgccacgt
gtgcaggagctgttcgaggcacgtgtgccgaagaaccgcgccccgatcgcgtcggtcgcc
ggtacagtatcgctttccgacgagggcaacttctggacactcaccatcactccagatgat
ggcagtgatgatgtggtttacgagaagctgtcgaagcgtcagggcttggcacaggtgcgt
cgcccaatggagtctaacccggatgcgatgattgagcgttcgttgcgcgaaggcgaccac
gttgaggtaggcgaccgcctgctccgtggtgcggctgacccgcacgatgtactcgaagtt
ctggggcgtcgcggcgtcgaaaagcacctcatcgacgaggtgcaggccgtgtatcgggcc
cagggtgtgtcgattcacgacaagcacattgagatcatcatccgtcagatgctgcgccgt
ggcactgtcatcgatgctggttccacccagtaccttccgggtacgttggcggatctgtcc
gaggcgaagcagatcaactccggtgtagttgcagaaggtggccagccagcagagctgcgc
tccgagatcatgggtattacgaaggcctccctggcgaccgagtcgtggctttccgcggca
tcgttccaggagaccacccgcgtgctcaccgatgcggcgatcaaccgacgttccgatcag
ttgatcggcctgaaggagaacgtgatcatcggtaagctcatcccggctggcaccggtatc
tcgcgttaccgcaatatctccgtcaagccgaccgaggccgcccgctccgtggcatactcg
atcccgagcttcggcgattccatctacggcgacgatggctatggtgaattcaccggcgcc
tccgtcccactggatgagtacggctttgaccagctgtcctag
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