Corynebacterium cystitidis: SAMEA4530656_2056
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Entry
SAMEA4530656_2056 CDS
T07131
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
ccys
Corynebacterium cystitidis
Pathway
ccys03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ccys00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SAMEA4530656_2056 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccys03021
]
SAMEA4530656_2056 (rpoB)
03400 DNA repair and recombination proteins [BR:
ccys03400
]
SAMEA4530656_2056 (rpoB)
Enzymes [BR:
ccys01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SAMEA4530656_2056 (rpoB)
Transcription machinery [BR:
ccys03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SAMEA4530656_2056 (rpoB)
DNA repair and recombination proteins [BR:
ccys03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SAMEA4530656_2056 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
SNV86746
LinkDB
All DBs
Position
1:complement(2112273..2115767)
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AA seq
1164 aa
AA seq
DB search
MLEGPILAVSRQTKSVAEIPGAPKRYSFAKISEPLAVPGLLDVQSESFSWLVGTPEWRER
QQELRGPDARVTSGLEDILEELSPIQDYSGNMSLSLSEPRFDSVKYTVDECKDKDINYSA
PLYVTAEFINNDTQEIKSQTVFIGDFPLMTDKGTFIVNGTERVVVSQLVRSPGVYFDETI
DKSTERPLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTEAQIKER
FGFSEIMMSTLESDGVANTDEALLEIYRKQRPGEQPTRDLAQSLLENSFFKPKRYDLAKV
GRYKINRKLGLGGDHDGLLTLTEEDLATSLEYLVRLHAGEKEMTSPTGEVIPINTDDIDH
FGNRRLRTVGELIQNQVRVGLSRMERVVRERMTTQDAESITPTSLINVRPVSAAIREFFG
TSQLSQFMDQNNSLSGLTHKRRLSALGPGGLSRERAGIEVRDVHPSHYGRMCPIETPEGP
NIGLIGALASYARVNAFGFIETPYQKVENGKLTDHIDYLTADEEDRYAIAQAAIEMDADG
TIIEERIEVRIKDGDIAVTDAQGVDYLDISPRQMVSVATAMIPFLEHDDANRALMGANMQ
KQAVPLLRAEAPFVATGMEQRAAYDAGDMVISEKAGVVENVSGDIITIMDDEGQRDTYLL
RTYERTNQGTCYNQLPLVNIGDRVEAGQVIADGPGTKNGEMSLGRNLLVAFMPWEGHNYE
DAIILNQRVVEDDILTSVHIEEHEIDARDTKLGAEEITREIPNVSEEVLKDLDERGIVRI
GADVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGETGKVIAVRR
FSREDDDDLSPGVNEMIRVYVAQKRKIQDGDKMAGRHGNKGVVGKILPQEDMPFMADGTP
VDIILNTHGVPRRMNIGQVLEVHLGWLAKAGWTVNPDDPANAALLETLPEALHDVPADSL
TATPVFDGATNEEIAGLLVNTKPNRDGDVMVDGDGKTVLFDGRSGEPFKYPISVGYMYML
KLHHLVDEKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMEVWAMQAYGAAYTLQELLTI
KSDDVVGRVKVYEAIVKGDNIPDPGIPESFKVLLKELQSLCLNVEVLAADGTPMELDGDD
DDDHAGSSLGINLSRDEGSAADTA
NT seq
3495 nt
NT seq
+upstream
nt +downstream
nt
gtgctggaaggacccatcttggcagtctcccgccagaccaagtcagtggccgaaatcccc
ggagccccgaagcggtactcgttcgctaaaatcagcgaaccgctcgccgttcccgggctt
cttgacgtacagtccgaatctttttcgtggctcgtcggcacgccggagtggcgtgaacga
cagcaagagttgcgtgggcctgatgcccgcgtcaccagtggcctcgaggacatcctcgaa
gagctctctccgattcaggattactcgggcaacatgtccctttccttgtcggagccacgc
ttcgactcggtgaagtacaccgtcgacgagtgtaaagataaagacattaactactccgcc
ccgctttatgtgacggcagagtttattaacaacgacacccaagagatcaagtctcagacg
gtgttcatcggcgacttcccgctgatgaccgacaagggaacgttcatcgtgaacggtacc
gagcgtgtcgttgtctcccagctggtgcgctcaccaggtgtctacttcgatgagacgatc
gataaatcgactgagcgtccgctgcactccgtgaaggtcatcccttcgcgtggtgcgtgg
ctcgagtttgacgtcgataagcgcgatactgttggtgtgcgcatcgaccgtaagcgtcgc
cagcctgtcaccgtgctattgaaggcactgggctggactgaagcgcagatcaaggagcgc
ttcggcttctctgaaatcatgatgtccaccctcgaatctgatggtgtggccaacaccgat
gaggcgttgctggagatctaccgtaagcagcgcccaggtgagcagccgacgcgcgacctc
gcgcagtccctgctggagaactccttcttcaagccgaagcgctacgacctggcaaaggtt
ggtcgttacaagatcaaccgcaagctgggtctggggggcgaccacgatggtctgctcacc
cttaccgaagaggatcttgcgacctcgctggaatacctcgtgcgcctgcacgccggtgag
aaggaaatgacctccccaacaggtgaggtcatcccgatcaacaccgacgacattgaccac
tttggtaaccgtcgtctgcgcaccgtcggtgagctgatccagaatcaggtccgcgtgggc
ctttctcgtatggaacgcgtggtgcgcgagcggatgaccacccaggatgcagagtcgatt
accccgacttccctgattaacgttcgccccgtctcggcagcaatccgtgagttcttcggt
acctcccagctttctcagttcatggaccagaacaactccctgtccggcctgacgcataag
cgtcgtctgtccgcacttggtcctggtggtctgtcccgtgaacgcgctggtattgaggtg
cgcgacgtgcacccatcgcactatggtcgcatgtgcccgatcgagaccccggaaggcccg
aacattggcctgattggtgctctggcatcgtacgctcgcgtcaacgcgtttggttttatt
gaaaccccgtaccagaaggtcgaaaacggcaagctgaccgaccacattgactatctcact
gctgacgaagaagaccgttacgcgattgctcaggcagcaatagagatggacgccgacggc
accatcatcgaggagcgcatcgaggtccgtatcaaggacggagatattgcggtcaccgat
gcccagggcgtcgactacctcgatatttccccgcgtcagatggtctctgttgcaaccgcc
atgattccgttcttggagcatgacgacgctaaccgtgccctgatgggtgcgaacatgcag
aagcaggcagtgcctctcttgcgtgcggaagcaccattcgtggctaccggcatggaacag
cgcgctgcatacgatgcaggcgacatggtgatctccgagaaagccggcgttgtggaaaac
gtctccggtgacatcatcaccatcatggatgatgaaggccagcgcgacacctacctgctg
cgcacctatgagcgcaccaaccagggcacctgctacaaccagctgccactggtcaacatc
ggcgaccgtgtagaagcaggccaagttatcgcagatggtccaggcaccaagaacggcgaa
atgtcgcttggccgcaacctgctggttgcattcatgccgtgggaaggccacaactacgag
gacgcaatcattctcaaccagcgcgtggttgaagatgatattctcacctccgtccacatc
gaagagcatgagattgatgctcgcgacaccaagcttggtgccgaggaaatcactcgtgaa
atccctaatgtgagcgaagaagtgctcaaggacctcgacgagcgcggtatcgtccgcatc
ggcgctgatgtccgcgacggcgacattctggtgggcaaggtcaccccgaagggtgagacc
gagctgaccccggaggagcgcctgctgcgcgctatctttggtgagaaggcccgcgaggtt
cgtgacacttccctgaaggtgccgcacggcgagaccggtaaagttatcgcagtccgtcgt
ttctcccgcgaggacgatgacgatctgagcccaggtgttaacgagatgattcgcgtctac
gttgcacagaagcgcaagattcaggacggcgacaagatggctggacgtcacggcaacaag
ggtgtcgtcggcaagatcctgccccaggaagacatgccgttcatggcggacggaacacca
gtggatatcattctcaatacccacggtgtgccacgtcgtatgaacatcggccaggttctc
gaggttcacttgggctggctggcgaaagccggttggaccgtcaaccctgatgacccagcc
aacgcagcactactggagacactgcctgaggcgctccacgatgtgccggcagactcgctg
actgcaaccccggtgttcgacggtgccactaatgaagagatcgcaggcctattggtgaac
accaagcccaaccgtgatggtgacgtcatggtggacggcgacggcaagacagtgcttttc
gacggtcgctccggtgaaccattcaagtacccgatctccgtcggttacatgtacatgctg
aagctgcaccacctggttgacgagaagattcacgctcgttccaccggcccttactccatg
attacccagcagccgctgggtggtaaggcgcagttcggtggccagcgcttcggtgagatg
gaggtgtgggcaatgcaggcatacggcgctgcctacactctgcaggagctgttgacgatt
aagtcggacgatgttgttggccgtgtgaaggtctacgaggccatcgtgaagggcgacaac
atccctgacccaggcatcccagagtccttcaaggtgctcctgaaggagctgcagtcgctg
tgtctcaacgttgaggttcttgcggcggacggcaccccgatggagctcgacggcgatgac
gatgatgaccacgctggttcttcgctaggcatcaacctctcgcgcgacgaaggctctgca
gcagataccgcataa
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integrated database retrieval system
