Chthonomonas calidirosea: CCALI_00640
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Entry
CCALI_00640 CDS
T02699
Name
(GenBank) RNA polymerase, sigma 70 subunit, RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
ccz
Chthonomonas calidirosea
Pathway
ccz02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
ccz00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
CCALI_00640
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccz03021
]
CCALI_00640
Transcription machinery [BR:
ccz03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
CCALI_00640
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r3
Sigma70_r4
Sigma70_r1_2
Sigma70_r4_2
LexA_DNA_bind
HTH_AsnC-type
HTH_24
Motif
Other DBs
NCBI-ProteinID:
CCW34466
UniProt:
S0ESV4
LinkDB
All DBs
Position
719837..721048
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AA seq
403 aa
AA seq
DB search
MTGAAADTTYPSDDTTKTRKQRRRSLSLNGQQVCLASERKVKPTNTEAEMVPLPLQEDIQ
TLPCLQPGDLLPGVENAKPWPDPDDGDEGLFACDEEIASLPYPDTQLSDDVETFTPDDSV
HAWLREIGKFPLLTVEEEIRLAQCILRARENKDDPELKRAAQQARDALTRANLRLVVSIA
KRYHGRGMALSDLIQEGNIGLLRAIEKFDYRRGYKFSTYATWWIRQAITRAIADKGRTIR
IPVHMVETINKLVRVSSQLLQENGREPTVEEIARAMNLSPEKVAEIIRIAPEPLSLETPI
GEGEESCLADFVEDKEHSSLPEIASQNILREKLADALNMLEEREREVLIMRYGLEDGDPK
TLEEVGRHFCLTRERIRQIELKALQKLRSPRYSRHIRTYLEWQ
NT seq
1212 nt
NT seq
+upstream
nt +downstream
nt
atgaccggcgccgccgcagatacaacctatccgtcggacgatacgacaaaaacacgaaaa
caacgccgtcgttcgctttccctaaacggccagcaagtctgcctggcctccgagagaaag
gttaagcccaccaacacagaagccgaaatggttcctctaccccttcaagaggatatccaa
acccttccttgtctccaacccggagacctactgcccggtgtcgaaaatgccaagccttgg
cccgatcccgatgacggcgatgaggggctttttgcttgcgatgaagagatagcttctctg
ccttaccccgacacacaactctccgacgatgttgaaacctttactcccgacgactcggtg
cacgcctggttacgtgaaataggaaaatttcctcttctcacggtggaagaagagatacgt
ctcgctcaatgcattctgcgtgctcgcgaaaacaaggacgacccggaactgaaacgagcc
gcccaacaggctcgcgatgccctcactcgtgcgaacttgcgcctcgtggtctctattgcc
aaacgctaccatggacggggcatggccctctctgatctgatccaagagggcaacatcggc
ctgcttcgtgccatcgaaaagttcgactatcgtcgtgggtataagttcagcacctatgct
acatggtggatccggcaagctatcacccgtgccatcgccgataaaggccgtacgatccgt
atccctgttcatatggtagaaacgatcaacaaactcgttcgcgtctcgtctcaacttctg
caagagaatggccgtgagccaaccgttgaggaaatcgcccgcgcgatgaacctgtcgccg
gaaaaggtggccgaaattattcgtatcgcccctgaaccgctctcgctcgaaacgcctatt
ggtgaaggagaagagagctgcttggccgacttcgtggaggataaagagcatagctccttg
cccgaaatcgcctctcaaaacattcttcgtgagaaactagccgatgccctcaatatgctc
gaagagcgcgaacgtgaggtgctcattatgcgctacggcctcgaagatggcgaccccaaa
accctcgaagaagtaggccgacacttctgcctaacgcgagaacgcatccgacagatcgag
ctaaaagccctccagaagctacgtagcccccgctatagccgccatattagaacctatctt
gaatggcaatag
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