Chthonomonas calidirosea: CCALI_00758
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Entry
CCALI_00758 CDS
T02699
Name
(GenBank) RNA polymerase, sigma 28 subunit, SigD/FliA/WhiG
KO
K02405
RNA polymerase sigma factor FliA
Organism
ccz
Chthonomonas calidirosea
Pathway
ccz02020
Two-component system
ccz02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
ccz00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
CCALI_00758
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
CCALI_00758
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccz03021
]
CCALI_00758
09183 Protein families: signaling and cellular processes
02035 Bacterial motility proteins [BR:
ccz02035
]
CCALI_00758
Transcription machinery [BR:
ccz03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
CCALI_00758
Bacterial motility proteins [BR:
ccz02035
]
Flagellar system
Flagellar assembly proteins
Stator
CCALI_00758
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4
Sigma70_r3
Sigma70_r4_2
HTH_23
GerE
UPF0122
HTH_Tnp_4
Motif
Other DBs
NCBI-ProteinID:
CCW34583
UniProt:
S0EXR1
LinkDB
All DBs
Position
complement(879464..880225)
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AA seq
253 aa
AA seq
DB search
MGEVPTSALWRALKEEGSQEAREALIQRYAHLVTITAGRLFGPLPAGIEKDDLISAGAIG
LIKAVDQFDPSRGIKFETYAITLIRGAILEMLRSDDWVPRLVRDQQKQLKQAYMRLESRL
GRPATEEEVAEELGITLDQLDKLFTNIGRTTLLSLDDLRIGTEQQRLADLLPAEGPSPLE
AVTIRERKRVLAAAVERLPEREKLVMSLYYKEGLTFKEIGMVLSVSESRAYQLHAQAVTR
LRSYLEQEAELFT
NT seq
762 nt
NT seq
+upstream
nt +downstream
nt
atgggcgaagttcctacgtccgcgctttggcgtgcgttgaaagaagagggcagccaagag
gcgcgggaagctctcattcagcgctacgcgcacctcgttacaattacggcggggcgtctt
ttcggtcctttaccggcagggatcgagaaagacgatctcattagtgccggagcgattggc
ctcatcaaggcggtagatcagttcgatcctagccgaggcatcaagtttgaaacctatgcg
atcacccttattcgaggtgccattcttgaaatgctccgcagcgatgattgggtacctcga
ctagtgcgcgaccagcaaaagcagctcaaacaggcctacatgcggttagagagccgcttg
gggcgtccggccacagaagaagaggtggctgaagagcttggcattacgctggatcagctc
gataagttgtttaccaacatcggtagaaccacccttctttccctagacgatctgagaata
ggcaccgagcagcagcgcctagcggatctcttgccagccgaaggacccagcccgcttgag
gcggtaaccatccgggagcgcaagcgcgttctcgcggccgccgtggaacggttgccggaa
cgggaaaagcttgtgatgtcgctctactataaggagggacttacgttcaaggagatcggt
atggtgctttctgtctccgaatcacgtgcctaccagttacatgcccaggctgtgacacga
ctgcggagctatttggagcaagaggcggagctttttacttag
DBGET
integrated database retrieval system
