Chthonomonas calidirosea: CCALI_01169
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Entry
CCALI_01169 CDS
T02699
Name
(GenBank) DNA helicase/exodeoxyribonuclease V, subunit B
KO
K16899
ATP-dependent helicase/nuclease subunit B [EC:
5.6.2.4
3.1.-.-]
Organism
ccz
Chthonomonas calidirosea
Brite
KEGG Orthology (KO) [BR:
ccz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ccz03400
]
CCALI_01169
Enzymes [BR:
ccz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CCALI_01169
DNA repair and recombination proteins [BR:
ccz03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
CCALI_01169
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDDEXK_1
ADDB_N
UvrD_C
UvrD-helicase
FliL
Motif
Other DBs
NCBI-ProteinID:
CCW34988
UniProt:
S0EYK5
LinkDB
All DBs
Position
complement(1366202..1369408)
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AA seq
1068 aa
AA seq
DB search
MTERSSRRPSLELVLGPAGAGKTLYAVRRYRSEPARTLFITATQVQADRALMLLEAKASP
NTVMSLQEFIGRLMEGSGVEMVGRSFQRLLLQDIIERWLYQDDYLAPMRFYDGFLSAMLE
QIREWKLSGLSPEDIQAMGPMAVEETGNPREADKFLELARLYGAYERFLKQHRRQDAEGM
LLLAKERLQAGPVRWLESFDTLILDGFYSLYPAQSTLLTMLAERFTQMQFLVTLLYDPER
PLLFASAEPTIRRLKADFQCRETFLNMAQPPLSVADVLALCLFHETRSKPLADANLEPIL
LFDAPDVYMEAEMVARAFQNLHDTGKYQWSDFAVVVRNVQAYAPTLVSVFERYGVPIGTF
GGEPVAENPLIRSLITFLDIVRHDWPRDAVLTFFKSSYTQPSYEDVERLRLLANEKGIRQ
GKEEWAALLPDLAPSSAQLLDTMLNRSERLLQAQSVQHLAEEIEILFEDFGLKEAIELGE
PLQQRRDQEACRVAMETLYSMADMMYLTDREQMPFGDFVERLISAWHNSTVVVGLGEDQV
WISEPYDIHQRRPRVVAVMGLLERLFPRRLTENPFLPDAVRRRLYEQTGLYLAPREARVN
EERLLFYLAVTAPSERLILSYPRSSGEADTLPSFYLEEVKQALESRPELLHVISRRLADV
APRSEDAGSWRERLLNLCVPLFDPAVSEERRAEVQTVVKRLCAENLSAVELLHAVAESRF
LPPLPRVEEETTRTWIREKTRRCSLAELEVYALCPFRHFLQYRLQLRVNIQTSFAMLQAK
LLRDVLYRAFSELSVADGQPLEEALLEKALKAELQNLVADISPHRKRLLWQGLMRLLKAI
ADKEQFYSRCLPLQPLYFRLAFGVPHANSAMYDPNSSAQPLIIPDPQGGEPLALYGVVDR
IDREANGDFVFLMDYTTAPPPSLSDITSGKAIRWPLMMLALERLFGMKVGGLCIDFAAQN
ARTRLFRTSRVAFQRFKLIPEREKGDQVQPLNDEQYKAMQQAAIESAIHHANAMRQGYVA
ARPGTHCRFCPYSDICRTTPQGHDGEPLYRLAGASRADDGSTGEMDSA
NT seq
3207 nt
NT seq
+upstream
nt +downstream
nt
atgactgagcgaagttcaaggaggccctctctggagttagttctcgggccggctggcgcc
ggtaagacgctctatgctgtaagacgttatcggagcgagccggcccgcacgcttttcatc
acagcaacccaggtgcaggcggatcgcgcccttatgctactggaggcgaaagcatcacca
aacacagtgatgtccttgcaagagttcattggtcgtctcatggagggtagtggcgttgag
atggtgggacgttcgtttcagcgcttgctccttcaagatatcatcgaaagatggctctat
caggacgattacctcgcccccatgcgtttttatgacggcttcctctctgccatgctcgaa
cagattcgagagtggaagctttcggggctttcgccagaagacatacaagccatggggcca
atggctgtggaggagacgggaaatccgcgcgaagcagataagtttctcgaacttgcaagg
ctctatggggcctacgagaggtttctaaagcaacatcgccgacaggatgccgagggcatg
ctgctactggcaaaagagcgcttgcaagcggggcccgtacgttggttagaaagcttcgat
accctgattttagatggcttttattccctctatcccgcccaaagcaccctgctgacgatg
ctggcggagcgctttacgcaaatgcagttcctagtgactctgctctacgatccagagcga
cctctgctctttgcttcggcggagccgacgatccggcgattaaaggccgactttcagtgc
cgtgagacgtttctcaacatggctcagccccccttgtcggttgcagatgtgttagctctg
tgtctttttcatgaaacgcgctctaagcctttggcagatgcgaatctagagcctattctc
ctctttgatgcccctgatgtctatatggaagcggagatggtggcgcgtgcctttcaaaat
ctgcacgacacagggaagtatcaatggagcgattttgctgtggtggtgcgcaatgtccaa
gcctatgcgccgactcttgtctccgtttttgagcgttatggcgttcccataggtaccttc
ggaggcgaacccgttgccgagaatccgctaatacgtagcctcatcacctttcttgatatt
gtacgacacgactggcctcgcgatgccgtgctaacgtttttcaagtcctcttatacccaa
ccgtcctatgaggatgtggagcggttaaggctgcttgctaatgagaagggaataaggcaa
ggcaaagaagagtgggcagccctgttgccggatctcgcgccatcctccgctcaacttctc
gatacgatgttgaatcgatccgagcggttgctgcaggcacagagcgttcagcatttagcc
gaggagatagagatcctgtttgaggatttcggtctcaaagaggctattgagctcggtgaa
cctttgcaacagagacgcgaccaggaggcttgccgtgtggctatggaaactctttactcc
atggccgatatgatgtatcttaccgaccgggaacagatgccttttggcgattttgtcgag
aggctcatctcggcatggcataatagtacggttgtagtagggttgggagaagaccaggtc
tggatttcggagccgtatgatattcatcaaaggcggcctcgtgttgtagctgtaatggga
cttttagagcgcctatttccgcgtcgccttaccgagaaccccttcttaccggatgctgtg
cgccgtcggttgtatgaacaaacaggtctttacctggcaccacgtgaggcgcgtgtcaat
gaagaacgcttactgttctacttagcggtcacagccccttcagaacgccttattctctcc
tacccgcggagcagtggagaggccgatacgcttccctctttctatctggaggaggtgaag
caagcgcttgaatctcgtccggagctgctacatgtgatctcacgccgtttggccgatgtg
gcgccgcgttcggaagatgccggctcgtggcgtgagcgcctcctgaatctctgtgtgcct
ctgttcgacccggcggtttcggaagagcggagggcggaggtacaaacggtggtgaagcgg
ttgtgcgccgagaatctgtcggcggtcgagcttttgcatgctgtggccgaatcccgattt
ctgcccccactgccgcgtgtagaggaagagacaacgcgaacatggattcgtgagaagaca
agacgttgttcgctcgccgagcttgaagtctatgcgctttgtcccttccgtcacttcctg
cagtaccgcctacaactgagagtaaacatccaaaccagcttcgctatgctacaagcgaag
ttgcttcgtgatgttttataccgtgccttctctgaactatcggttgccgatgggcagccg
cttgaagaagctcttctagaaaaagctttgaaggccgagcttcaaaatcttgttgccgac
atctcgccgcaccgtaaacgtctcttatggcaggggctgatgcgtctcctaaaggctatt
gcagataaggagcagttttatagccggtgcttgccccttcagcctctctattttcgtctg
gcgttcggtgtaccgcatgcaaattcggccatgtacgatccgaactcttcggcacagcca
ctgataattcccgacccgcagggtggagagccgcttgcgctttatggtgttgtggatcgg
atagatagagaagccaatggcgatttcgtttttttgatggactacacaaccgcgccgccc
ccgtccttgtcggatatcacaagcggtaaggcgattcgatggccactgatgatgctagcc
ctagagcgtctttttgggatgaaggtaggaggactctgcattgatttcgcagcccaaaac
gcgcgtactcgcctctttcgtacaagcagggtagcttttcagcgattcaagctgatccca
gagcgtgagaaaggagaccaagttcagccgttaaacgacgagcagtataaggccatgcag
caggctgccattgaatctgccatccatcatgcgaacgccatgcggcagggctatgtggcg
gcaagaccgggaacccactgtcgtttttgtccctattctgacatctgtcgcacgacgcct
cagggacacgatggcgaaccgttgtaccggttagcgggtgcatcaagggcagatgatggt
tcaacaggggaaatggactcggcatag
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