Chthonomonas calidirosea: CCALI_01477
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Entry
CCALI_01477 CDS
T02699
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ccz
Chthonomonas calidirosea
Pathway
ccz03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ccz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CCALI_01477
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ccz03400
]
CCALI_01477
Enzymes [BR:
ccz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CCALI_01477
DNA repair and recombination proteins [BR:
ccz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CCALI_01477
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
TRCF
AAA_22
AAA_30
Cas3-like_C_2
UB2H
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
CCW35293
UniProt:
S0EV63
LinkDB
All DBs
Position
1734156..1737365
Genome browser
AA seq
1069 aa
AA seq
DB search
MSLKELLSLADQLTGLDTLVSALRDSPSPTIAQIEGLAGTAKGFLLAHLTTALQRPILLI
TYQQEQAQRLADDLLHFGLPSESVAVLPASPSLFTPDDVVDHHLIGERLSALKLLGQNRP
CVVIGVIEAILRRTIPPAYLQQESLRLEAETEVDLDTILHRLVKLGYLPTLTVTQPGEFS
RRGGILDIYPSTAEAPIRIELFGDTIDSIRAFDVTTQRSIRREAWAEIAPAREAVLEPQR
IVEALHRIKTRLETRRAELLAQKTREATKAAERLTELVEADLVALEQGTGFNSLERYITY
IVPETICALDHLPPDGMVVLDEPHQVQEHWLRHDADLRSARERHYERGELLDLEPPILPL
EEGYARLQQHRLLLLTLLARHVEPFTPLCFLQVHSAAMESYRGRLSLLADEIGTWLTNEC
RVVIASDQPQRVREICAELHLPVQPKEQTPHNPGLYVQEGRLRAGFKFTDLKLYVLTDAE
LFGAARPVRSHRKVAGGVAISSLLDLRENDYVVHIHHGIGIYRGLVRRQIDGTERDFLFI
EYAGGDKLYVPADQIDRIQRYIGADGAPPQINRIGGGDWQRTKRKVREQAKQMAAELLRL
YAAREAATRPPFGPDTPWQIEMEEAFPYEETPGQLQAIQEVKADLERERPMDRLICGDVG
FGKTEVAIRAAFKVVSAGKQVAILCPTTVLAAQHHATFSERLAAYPITIELLSRFRTRAE
QRKTVEGLRTGSVDIVVATHRLLSKDVEFKDLGLLIIDEEQRFGVAQKERLKKLRTSVDV
LTLTATPIPRTLSMALSGLRDMSLIEDPPEGRMPVITYVREYDDELVRDAILRELERDGQ
VYFVHNRVESIYHVAQHLKKLIPDMRIEVGHGQMSEEELEQVMFDFYHHKADVLLCTTII
ENGLDIPNCNTILIDNADHMGLAQLYQLRGRVGRSNRQAYAYLLYRPNKVLREDAEQRLA
AIREFCALGSGYKVALRDLEIRGAGNLLGAEQSGAMLSVGFDLYCQLLSQAVQELRGEEP
IEDMLPAVDLPVTAYIPESYIPGEAERIYFYKHLSGARTLKASKTFRPN
NT seq
3210 nt
NT seq
+upstream
nt +downstream
nt
atgagccttaaagagcttctatcgctagccgatcaacttacaggcctcgatacgctggtc
agtgccctgcgcgactcgccatcgcccaccatcgcgcaaatagaaggcctggctggcacc
gccaagggcttcttgctggcacaccttactaccgctctccaacggcctatcctccttata
acctaccagcaagaacaagcccaacggcttgccgatgaccttcttcatttcggccttccc
agtgaaagcgtggccgttttaccggcctcgccaagcctctttacccccgacgatgtggtt
gaccaccatcttatcggagaacgcctgagcgccctaaagctcctagggcaaaaccggcca
tgcgtggttatcggtgttatcgaggctatactgcgccgaaccatcccacccgcctacctt
caacaggaaagccttcgcctagaggccgaaactgaggtagacctcgacaccatcctacac
cgacttgtgaagctcggctatctccctaccctcaccgttacccaacccggagagtttagc
cgccggggcggcatcctcgacatctatccctccaccgctgaggcgccaatacgaatcgag
ctcttcggcgataccatcgattcgatccgcgctttcgatgtaaccacacagcgctccatc
cgccgagaggcctgggcagagatcgcccccgcccgtgaggccgtcctcgaaccgcagcgg
atcgtcgaagcccttcatcgcataaaaacgaggcttgaaacccgccgcgccgaactgctc
gcgcaaaaaacacgagaggctaccaaagctgccgagcgtcttaccgaactggtggaggcc
gatctagtcgccctcgaacaaggtactggatttaacagcttggagcgctacattacctat
atcgtcccagaaactatctgcgctctcgaccatctgccacccgatggaatggtcgtgctc
gatgaaccacaccaggtgcaagagcactggctgcggcatgatgccgatctgcgctccgct
cgcgaacgccactatgaacgtggagagcttctcgacctggaacctcccatcctgccccta
gaggaaggatacgcgcgacttcaacagcatcgcctcctgctgctgaccctgcttgcacgc
catgtcgagccgtttactcccctctgctttcttcaggtgcattcggccgccatggaaagc
taccgcggccggctctccctgcttgcagatgagataggcacctggctgacaaatgaatgt
cgtgtggtcatcgcctccgaccaaccgcagcgcgtgcgcgagatatgcgccgaactgcat
ctgccagtgcaacccaaagaacagactccgcacaaccccggcctctatgtgcaggaggga
cgccttcgcgccggcttcaaattcaccgatcttaagctctatgtgctgaccgatgcggag
ctgttcggcgccgctcgacccgttcgctcccatcgcaaggtggccgggggtgtggccatc
agctccctgctcgatctgcgcgaaaacgactacgtggttcacatccatcacggcatcggc
atctatcggggcctcgtccgtcgccaaattgatggcaccgaacgcgatttcctcttcatc
gaatatgccggcggagataagctctatgtgcccgccgatcagattgaccgcatccagcgc
tatataggagccgatggggctccccctcagatcaaccgcattggcggaggcgactggcag
cgcaccaagcgcaaagtgcgcgaacaggctaagcagatggcggcagagctgctgcgcctc
tatgctgcccgcgaggccgccacacgccctcccttcggccccgacaccccgtggcagatc
gaaatggaggaagccttcccctacgaagagacccctgggcaactacaggccattcaagag
gtaaaagccgacctcgaacgcgaacgccccatggatcgcctcatctgcggcgatgtgggc
ttcggtaaaaccgaggttgccatccgtgccgcctttaaagtggtatctgccggtaaacag
gtggctattctctgccctaccaccgtgcttgccgctcagcaccacgccaccttctcggaa
cgcctcgccgcctaccccatcaccatcgaactgctctcgcgcttccgtactcgcgctgag
cagcgcaaaacggtggaaggcctgcgaacgggcagcgtggatatcgtcgtggccacccat
cgtctcctcagcaaagacgtggagttcaaagacctcggactgcttatcatagacgaagag
cagcgattcggggtagcccagaaagagcgcctcaaaaaactccgcacctcggtggatgtg
ctgacccttacggccacccccatcccgcgcaccctctcgatggccctctccggactgcgc
gacatgagcctcatcgaagacccacccgaaggacgtatgcccgttattacctatgtgcgt
gagtatgatgatgagctagttcgtgatgccattctgcgagagttggagcgcgatgggcag
gtctactttgtccataaccgcgtcgaatcgatctaccatgtggcgcagcacctgaaaaag
ctcatccccgatatgcgcatcgaggtggggcatgggcagatgtcggaagaggagcttgaa
caggttatgtttgatttttaccatcataaggcggatgtgctgctgtgtaccaccatcatt
gaaaacggcctcgatatccccaactgcaacaccatccttattgataatgctgaccacatg
gggctcgcacagctctatcagttgcgcggtcgcgtaggacgctccaaccgtcaagcctat
gcctatctgctctaccgccccaacaaggtgttgcgcgaggatgccgagcagcggcttgcg
gccattcgtgagttttgcgctctgggcagcggctacaaagtcgccctgcgcgatctggaa
attcgcggggcagggaatctcttgggggccgagcagagcggtgccatgctgagtgtgggg
ttcgacctctattgccaacttctttcccaagccgtgcaggagctgcgcggcgaagagccc
atagaggacatgcttcccgccgtcgatctgcccgtcaccgcctacatccccgaaagctat
atccccggcgaggcggaacgtatctacttctacaagcacctcagcggcgcccgcaccctc
aaagcatcgaaaaccttcaggccgaactag
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