Chthonomonas calidirosea: CCALI_02378
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Entry
CCALI_02378 CDS
T02699
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
ccz
Chthonomonas calidirosea
Brite
KEGG Orthology (KO) [BR:
ccz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ccz03032
]
CCALI_02378
03400 DNA repair and recombination proteins [BR:
ccz03400
]
CCALI_02378
Enzymes [BR:
ccz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
CCALI_02378
DNA replication proteins [BR:
ccz03032
]
Prokaryotic type
DNA Topoisomerases
CCALI_02378
DNA repair and recombination proteins [BR:
ccz03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
CCALI_02378
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim
Zn_ribbon_Top1
Toprim_4
Mur_ligase_C
TetR_C_46
Motif
Other DBs
NCBI-ProteinID:
CCW36182
UniProt:
S0EWM7
LinkDB
All DBs
Position
complement(2789820..2792018)
Genome browser
AA seq
732 aa
AA seq
DB search
MAKPLIIVESPAKTKTLKNFLGDRYQIEASMGHVRDLPRSRLGVNIAQDFAPEYRPIAER
KQVLKHLQEAAKKADTVYLASDPDREGEAIAWHLAETLKLKNPRRIQFNEITQQAVQQAL
QNPRDINMDLVNAQQARRILDRLIGYKLSPLLSKKIQSGLSAGRVQSVALRLICEREREI
QAFVPEEYWSLTAILTPEPPEVPFLFAAQLHSRGGERVELKTEADVNAVLAEIEGARYRV
VELKKRDVRRNPPPPFITSTLQQEAARKLYFSNRQTMAVAQELYEGVELGPEGSVGLITY
MRTDSVRVAQEAQEEARRFILERYGEAYVPPAPRQYKTRREAQDAHEAIRPTRVDRLPEQ
VAPYLTEDQLKLYRLIWQRFVASQMSPAQIEVTTADIAAQVEGAEKPPYIFRATGSVMKF
DGFTRVYTEGKDTEEKSDEERPPLPPLHEQQPLALERLEPRQHFTEPPPRYNEATIVKAL
EEKGIGRPSTYATIISVLRDRNYVELVNRSFVPTELGFLVNDQLVKHFPDIVDVGFTAEM
ETHLDEIEEGKTDWVALLREFYGPFEQSVAQALEKMESHKPPPVETEYRCPKTGNVMLLR
QSRYGVFLGCSAYPKCKKILKLNEKGEPVEGPEFTCGLEETKPAGAAVGDPSTLPNATEL
RCPDGREAVMVRRQGPFGPFLGCSAYPKCRTVLKLGEDGLPLPCQEFKCTYSEKGARKAR
TTPKSRTTKKKG
NT seq
2199 nt
NT seq
+upstream
nt +downstream
nt
atggcaaaaccgctcattattgtggaatcgcccgcgaaaaccaaaaccctgaagaacttt
cttggtgatagatatcagatcgaagccagtatgggccacgttcgcgacctgccgcgctcg
cgcttgggagtgaacatagcacaggattttgcgccggaatatcgccccattgccgagcgc
aagcaggtgctgaaacacctgcaagaggcagcgaagaaagccgataccgtctatctcgcc
tccgatccggatagagagggcgaggccatcgcttggcaccttgctgagactctgaaactt
aagaatcctcgccgcattcagtttaacgagatcacccagcaggcggtgcaacaggcactg
caaaacccgcgcgacatcaacatggaccttgtgaacgcgcagcaagcacgccgcattctc
gatagactgatcggctacaagctctcgcctcttctttccaagaaaattcagagcgggcta
tccgccgggcgcgtgcaatcggtggccttacggcttatctgcgaacgggaacgcgagata
caggcctttgtgcctgaagagtactggtcacttaccgctattctcactccggaacctccc
gaggtgccctttttgttcgctgcccaactccacagccgtgggggcgagcgcgtagagctg
aagacagaggcggacgttaacgccgttctggctgagatcgaaggcgcacgctaccgggta
gtggagctaaaaaagcgcgatgtccgccgcaacccaccaccgcccttcatcaccagcaca
ctacagcaagaggccgctcgtaaactctacttctccaaccgccagaccatggcggtggca
caggagctctacgagggcgtagagttggggccggagggcagtgtaggtctcattacctac
atgcgtaccgattcggtgcgcgtggcgcaggaggctcaagaggaggcacggcgcttcatc
ttggagcgatacggcgaggcctacgtaccgccagcaccccgccagtacaaaacccgccgt
gaggcccaagatgcacacgaggccatccgccctacccgtgtagaccgcctgccggagcag
gtggcgccctaccttaccgaagaccaacttaaactctatcgccttatttggcaacggttt
gtggccagccaaatgagccccgctcaaattgaggtaaccaccgccgacattgcagctcag
gtggagggcgccgaaaaaccaccctacatcttccgcgcaaccggcagcgtgatgaagttc
gacggtttcacgcgcgtctataccgaggggaaggacacagaggagaagagcgatgaagag
cgcccgcctttacctcccttgcacgagcaacaaccgctggctttggaaaggctggagcct
cgccaacacttcaccgagcctccaccgcgctataatgaggccaccattgtaaaagcgctg
gaggaaaaaggtattggacgcccatccacctatgcgaccatcatctcggtgctgcgcgat
agaaactatgtggagctggtaaaccgaagctttgtgcccaccgagctcggcttcttggta
aatgaccagctcgttaagcatttccctgacatcgtggatgtaggtttcaccgcagaaatg
gagacccatctcgatgagatcgaggagggcaagacggattgggtcgctctattaagagag
ttctacgggccttttgaacagtcggtcgctcaggcgcttgaaaagatggagagccacaaa
cctccaccggtcgagaccgagtatcgctgcccgaagacagggaatgtgatgctgctccgg
cagagccgctacggtgttttcttgggctgtagcgcctaccccaagtgcaagaagatactt
aagttgaacgagaaaggcgagccggtggaagggccggagttcacctgcggactggaagaa
acaaagcctgctggcgctgccgtgggcgatccaagcacccttcctaacgccacggagctg
cgctgccctgatggacgcgaggccgtgatggtgcgtcgtcaagggccttttggtcccttc
ctcggatgcagcgcctatcctaaatgtcgcacggtgttgaagttaggggaagatgggctg
ccgctcccctgccaagagtttaagtgcacctactcggaaaagggagcgcgaaaagcccgt
accaccccaaaatcccgtaccacaaaaaagaaaggataa
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