Chthonomonas calidirosea: CCALI_02504
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Entry
CCALI_02504 CDS
T02699
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ccz
Chthonomonas calidirosea
Pathway
ccz03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ccz00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CCALI_02504
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccz03021
]
CCALI_02504
03400 DNA repair and recombination proteins [BR:
ccz03400
]
CCALI_02504
Enzymes [BR:
ccz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CCALI_02504
Transcription machinery [BR:
ccz03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CCALI_02504
DNA repair and recombination proteins [BR:
ccz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CCALI_02504
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
CCW36301
UniProt:
S0EX29
LinkDB
All DBs
Position
2938397..2943025
Genome browser
AA seq
1542 aa
AA seq
DB search
MADASTFAKIKIGIASPEEIRAWSYGEVKKPETINYRTFKPERDGLFCERIFGPVKDWEC
HCGRYKKMKFKGVICERCGVEVTRSKVRRERMGHIELAAPVCHVWYLKAVPSPLGLILDM
SPRHLERVLYFQAYIVIDVDEVRIAENLSEIRAVVAAEEEKIRQEGAETRERRIQEFNRE
VQRRRSAAASDDPEVAAEGWSEEIIARKRADLEVRLRHDEEDVEFRIQDLRNALAVLEKV
KPHDLITEDQYRALENLQQVLAYHFGDNSWYEVVRAGQGGAAIKELLQRIDLEQLKRELR
QEVENTQGPKRVRATKRLELVEAFLASRTRPEWMILEAVPVISPELRPMVMLEGGRFAAS
DLNDLYRRIINRNNRLKRIIEIRAPESIVNHEKRLLQEAVDALIDNSRRQRPVLGSNGRP
LKSLSDMLKGKEGRFRKNLLGKRVDYSGRSVIVVGPHLKLHQCGLPKEMALELFKPFVMK
TLVEHGYTTNIKTAKRMIEKAKPEVWDALEEVIREHPVLLNRAPTLHRLGIQAFEPILIE
GKAIQIHPLVCYAFNADFDGDQMAVHVPLSAYAQAEARILMLSSHNLFSPAHGGPIVAPT
QDIVLGCYYLTMMRMLKEGEEPRNYVFSSPDEALLAYSSGELGLHDPITLKMPRPFYNDG
DDTPQWRQEVVGLVKGSDGQWRYRTAEGWQEVPPGKLQEAITRHCTTVGRLIFNQILPEK
LRYADAYLFNTMNKSALAELVSTVYDKHGKERCVQFLDEMKSLGFKYAMKGGITIAMTDM
DSPSERDEIIRRAEERVREINQSYDMGMLSAAERKRRVLEEWLQASDDVAKAIMKDFDEH
NQFNPIYIITNSGARGSTKQVAQLSGMRGLMTDPFGNLIEDLPIKSNFHEGLKVLEFFVS
THGARKGMADTALRTADAGYLTRRLVDVSQDVIVRDKDCGTTEGIEVEEILDGTEVLESL
SERIRGRYTLSEIEDPLTGEILVGANEEISDAVASRLEQIRVARDTILDAETKEVLAHEG
DLMTVEQAQELVDRGVTRARAKRGELASNIYEITRSLRVSVRSVLNCELRQGVCAHCYGR
DLATGRLVEIGVAVGIIAAQSIGEPGTQLTMRTFHTGGVAGKYLTGVANVKQRRQSTLRE
LHDDIQKGIVNLEETGGSERERRASIQAMLKVLEDQVRGLLRVSELFEARSPKGRAIVTE
YAGDVVAIRSEGARKVYIRSEVELHEDQPHYGLGTDPIAGEDIFDPETGEPIAKMWEPLA
DKQLRKIFEAGLKRIKVLHSYLVPYRGDLAVEEGQHVERGDRLTDGPLDPHKVLELQGPR
GVQDYLVREIQAVYKAQGVDINDKHIEVIVRQMLRKRKVRHPGDTRFLIGQIVDKFVFQD
ENARVRKLGLREATADWVLLSITDAALATESFLSAASFQKTTRVLTDAAVRGKKDELVGL
KENVIIGRLIPAGTGLPHYRSLEVAASDGTPIIIEPPKREAERLAKALPEESAELPKEEP
ERYTPEEAVAALKTVGAQDSEDLHGDTEPAEELQEEPKEEEN
NT seq
4629 nt
NT seq
+upstream
nt +downstream
nt
atggcagatgccagcacgtttgcaaaaataaagatcgggatagcttctcccgaagagatc
cgagcgtggtcgtatggcgaggtgaagaagccggagacaattaactaccgaacctttaaa
ccggagagggacggcctgttttgtgaacggatcttcggccccgttaaggattgggagtgc
cactgcggccgctataaaaagatgaagttcaagggggttatttgtgaacgctgcggcgtg
gaggtaacccgcagcaaagtgcggcgcgagcgcatggggcatatcgagctggccgcgccc
gtatgccatgtgtggtacctcaaagccgtacccagccccctagggcttattctcgatatg
agcccgcgccatctggagcgtgtgctctatttccaagcctatattgtgattgatgtggac
gaggtgcgcatcgccgagaacctcagcgagatacgcgccgtggtggccgctgaagaggag
aagatccgccaagaaggagccgaaaccagagagcggcgcattcaagagtttaatcgcgag
gtacagcgccggcgcagcgcagccgcctcggacgacccagaggtggccgctgaggggtgg
tctgaagagatcatcgcgcgcaaacgagccgatctcgaggtgcggctgcgtcatgatgag
gaggatgtggagtttcgtattcaagacctccgcaacgccctggccgtccttgaaaaggtg
aaaccccacgacttgattaccgaagatcagtatcgcgccctcgaaaacctccagcaggtg
ttggcgtatcacttcggtgataactcatggtacgaggtggtacgggcaggtcagggaggg
gcggccatcaaagagctactacaacggattgacctcgaacagctgaagcgcgagctgcgc
caggaggtggagaacacccaaggccctaaacgcgtgcgtgccacaaagcgtcttgagctg
gtggaagcctttcttgcctctcgtactcgacccgaatggatgatcctggaggcggtgccc
gttatctctccggagctgcgccccatggtcatgctggagggtgggcgttttgctgcatcg
gacctgaacgatctctatcgtcgtatcatcaaccgcaacaaccggttgaagcgcattata
gagatcagggctcccgaaagcatcgtaaaccatgagaaacgcctgcttcaagaggccgtt
gatgccctcattgataacagccgccgccaacgccccgtgctcggcagcaacggtcggccc
ctgaagtccctttccgacatgttgaaaggaaaagagggacgctttcgcaagaacctgttg
ggtaagcgcgtagactactcggggcgttcggttatcgtggtggggccccacctaaaactg
catcaatgcggtctgccaaaagagatggcgcttgagctgtttaagccgttcgttatgaaa
acgcttgtggagcacggctacaccaccaacatcaagacggccaagcgcatgatcgagaag
gcgaaacccgaagtttgggacgctcttgaagaggtgatccgagagcatccggtgcttttg
aatagggcacctaccctgcaccgcttgggtattcaggcctttgagcccattctcatcgag
ggaaaggccatccagattcatccgctggtctgctatgccttcaatgccgacttcgacggt
gaccagatggcggtgcatgttccgctttcggcctatgcccaagcggaggcgcgcatcctg
atgctctcctcgcacaacctctttagcccggctcatggtgggcccattgtggctcccaca
caagatatcgtcttgggctgctactacctcaccatgatgcgcatgctgaaggagggcgag
gagcctagaaactatgttttctcatcgccagatgaggcgctgctggcctatagcagcggc
gagttggggctgcacgacccgattaccctcaagatgccgcgccccttctacaacgacggc
gacgatacgccccaatggcgacaagaggttgtagggcttgtgaaaggaagcgatggccag
tggcgctaccgaacggccgagggctggcaggaggttcctcctggcaagcttcaagaggcc
attacccgtcactgcacgacggtaggtaggctgatctttaaccagattctgcccgagaag
ctaagatatgccgatgcctacctcttcaacaccatgaacaagagcgctcttgcggagctt
gtctccacggtctacgacaagcatggcaaagagcgatgtgtccagttcttggatgagatg
aagtcgctcggcttcaagtacgccatgaagggcggcatcaccatcgccatgacggatatg
gatagtcccagtgagcgggacgagatcatccgacgggcggaagagcgggttcgcgagatc
aaccaatcctacgatatggggatgttgtctgccgccgaaagaaaacgtcgtgtcctggag
gagtggctgcaagcctccgatgatgtggccaaagccatcatgaaggatttcgacgagcat
aaccagtttaaccccatctacatcattaccaatagcggcgcccgtggctcaacgaagcag
gtggctcagctctccggtatgcgcggcttgatgaccgacccctttggaaacctcattgaa
gacctgcccattaaatccaacttccatgaggggctcaaggtactggagttcttcgtctcc
acacacggcgccagaaaaggaatggccgacaccgccttgcgcaccgccgacgcaggctat
cttacccgccgcctggtggatgtgtcgcaggacgtgatcgtgcgcgataaggactgcggc
accaccgagggcatcgaggtagaggagatcctcgacggaaccgaggtgctcgaatcgctg
agcgagcgtatccgaggccgctacacactctcggagatcgaagaccccctgacaggcgaa
atactcgttggcgccaatgaggagatatccgatgcggtcgccagccgattggagcagatt
cgagtggcgcgtgataccatcctcgatgcggaaaccaaagaggtgcttgcacatgaaggc
gatctgatgacggtcgaacaggcgcaagaactggtggatcggggggtgacacgcgcacgt
gcaaagcgcggcgagctggcatccaacatctacgagatcacccgctcccttagggtgtcg
gtgcgctccgtattgaactgtgagctgcgtcagggtgtttgcgctcactgctacgggcgg
gatctggccaccggtcggctcgttgagatcggggtggctgtggggattatcgcagcgcag
tcaatcggtgagccgggtacgcagctcaccatgcgcacgttccacacgggcggagtcgcc
ggtaagtaccttaccggcgtggccaacgtcaaacagcgccgtcaatctacccttcgcgag
ctccatgacgacatccagaagggcattgtaaacctcgaagaaacgggtggctccgagcga
gagcggcgcgcctccatccaagcaatgctgaaagtgctggaagatcaggtgcgcgggctt
ctgcgtgtcagtgagcttttcgaggcgcgtagtcctaaaggacgtgccatcgttaccgag
tatgctggcgacgtggtcgccatacgcagtgaaggcgcacgtaaggtctacatccgctct
gaggtagagctgcacgaagatcagccgcactatggtcttgggacagaccccatcgctggt
gaagacatcttcgaccccgaaacaggcgagccaatcgctaaaatgtgggagccgcttgcc
gataagcagttacgcaagatatttgaggcgggcttgaagcggattaaggtgcttcactcc
tacctcgtgccctatcgtggcgatttggccgtggaggaggggcagcatgtggagcgtggt
gatcgcctcaccgatggtccgctagacccccacaaagtgttggagctacaaggcccgcgc
ggcgtgcaggactaccttgtgcgcgaaatacaagccgtctacaaggcgcagggagtggac
attaacgacaagcatatcgaggtgatcgtgcggcagatgctgcgcaagcgcaaggtacgc
catccaggcgacacgcgtttccttatcggtcagatcgtggataagttcgtgttccaggat
gaaaacgcgcgagtaaggaagttaggccttcgagaggccacagcggattgggtgttgctg
agcatcaccgatgccgcgcttgcgaccgaaagcttcctctccgctgcctccttccagaag
accacgcgcgtgctgaccgatgctgccgtgcgaggtaagaaggacgagctggtgggcttg
aaagagaacgtcattatcggacgtctcattcccgctggcacgggcctcccgcactaccgg
agcctcgaggtggccgcttcggatggcacaccgatcatcatcgagccgccaaagcgagag
gcggagcggttggcaaaagcccttcccgaagagagcgccgaacttcccaaagaggaaccg
gagcgctatacccccgaggaggctgttgctgctttgaagacggttggtgcccaagactcc
gaagaccttcacggggatacagaacctgctgaagagttgcaagaggagccgaaagaagaa
gaaaactag
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