Corynebacterium diphtheriae HC04: CDHC04_1675
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Entry
CDHC04_1675 CDS
T01696
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
cda
Corynebacterium diphtheriae HC04
Pathway
cda03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cda00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CDHC04_1675 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cda03019
]
CDHC04_1675 (rne)
03009 Ribosome biogenesis [BR:
cda03009
]
CDHC04_1675 (rne)
Enzymes [BR:
cda01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
CDHC04_1675 (rne)
Messenger RNA biogenesis [BR:
cda03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CDHC04_1675 (rne)
Ribosome biogenesis [BR:
cda03009
]
Prokaryotic type
rRNA processing factors
CDHC04_1675 (rne)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
IF2_N
DnaJ_CXXCXGXG
Fy-3
Motif
Other DBs
NCBI-ProteinID:
AEX81666
LinkDB
All DBs
Position
complement(1785767..1788655)
Genome browser
AA seq
962 aa
AA seq
DB search
MAEKSKKTTKNQAVSSPIGQVVAALDRSIIGEKIRVHILAKQLGVASKELIAQLATMGLK
KVAQSTLSNQEANQLLDSFVPAQPEVDEKLRHRVEKNVENEIAQIEAKVNRDLEEAAANG
HGVVDSEEEKLRYRVEKNVDNEVEQIKQQVERELSQRSAEVEDLHEVIELEKEAEPLEDV
EPESALAPASVSYSVPLFIAPTVVDDELEEVEDDEDGEDDTDDDSTHAKRRRRGRRGAGR
GKGADDSTETVEAEEITEPVGIKGSTRLEAQRRRRAELREESKKKRHIVSEAEFLARRES
VTRTMVVRERDRVDHHGMVTQVGVLEDGMLVEHFVTSEAQASMIGNIYLGRVQNVLPSME
AAFIDIGKGRNGVLYAGEVDWRAAGLGGRGRRIEQALKSGDQVLVQVAKDPIGHKGARLT
TQISFAGRYLVYVPGGRTAGISRKLPAPERKRLKEILKEVVPHDGGAIIRTAAENVSAEA
IGADVNRLHKLWDKIQQRTEEEKASKGAKPVTMYEEPNMLVKVVRDLFNEDFTSLVIDGD
RAWNTVHAYVQSVAPDLLGRLVRFDRSEHEGRDAFEVHRVNEQIKKALSRKVWLPSGGTL
VIDRTEAMTVIDVNTGKFTGAGGNLEETVTKNNLEAAEEIVRQMRLRDLGGMIVVDFIDM
VLPENQDLVLRRLTEALGRDRTRHQVSEVTSLGLVQMTRKRLGTGLLETFATECPHCEGR
GVIIHDDPVEQRDADVAMEKSHRARNERKKNKNHTPSEHPAAVAMHEEKKKVSIEDLVAA
VVIEDDPQPEPEVAPAPADDDVMDIVSAALDRAYEEDPDEPSGSDYLPLEEKPQTYAEAV
EEFERSPRRKRKTRGNSVSDVPPRKADFEKPEPQPEPEVVVEKVSSRGRRRAVRRTVVET
TPEVVAPTETVESSRGRRRAVRKKMAPQPVQTEAVVEDKHEVSAPSQGGRGRRRASRRAP
RR
NT seq
2889 nt
NT seq
+upstream
nt +downstream
nt
gtggctgaaaagtccaagaaaacaaccaaaaaccaagctgtatcttcgccgattggccaa
gtggtagctgcattggatcgctcgattattggcgaaaaaatccgtgtgcatattctggcc
aagcagctaggtgttgcatctaaagagctcatcgcgcagttggcaaccatgggactgaaa
aaagtagcgcagtcgacgttgagtaaccaagaggctaatcagctgctcgactcttttgtt
ccagcgcaaccggaagtagatgagaagttgcgccaccgcgtggaaaagaacgtggaaaat
gagattgcgcagatcgaagccaaggtcaaccgcgacttggaagaagcggcggcgaacggg
catggtgtagtggattctgaggaagagaagctgcgctaccgcgtggaaaagaacgtggat
aacgaggtcgagcagattaagcagcaggttgagcgcgaactaagtcagcgttcggcggag
gtagaggatctccacgaggttatcgagctcgaaaaagaagcggagccgctggaggacgtt
gagccggaatctgcacttgcgccagcgagcgtgtcctatagcgttccgctgtttatcgcg
cccacggtcgttgatgatgagctcgaagaagtagaagacgacgaggatggggaagacgac
actgacgacgactccactcacgctaagcgtcgtcgtcgcggccgtcgtggggctggtcgt
ggcaagggtgcagatgactcaactgagactgtggaagccgaagaaatcaccgaaccagta
ggtattaaaggctcaactcgtttggaagcacagcgtcgtcgccgcgcggagctgcgggaa
gagtcgaaaaagaagcgccacatcgtttctgaggccgagttcctagcgcgtcgcgaatct
gtcacgcgcacgatggtggtacgtgagcgcgatcgtgtagaccaccatggcatggtgact
caggtgggtgtgctcgaagacggcatgcttgttgagcactttgttaccagtgaggcccaa
gcctcgatgatcggcaacatctatcttggtcgcgtgcaaaacgtcctgcccagcatggaa
gctgccttcatcgacatcggaaagggccgcaacggtgtgctttacgcgggcgaggtggac
tggcgtgccgcaggccttggtgggcgaggccgtcgtatcgagcaagccctgaaatccggt
gaccaagtcctcgtccaggttgctaaagatcctattgggcacaagggtgctcgccttacc
acccagatttctttcgcgggacgctacttggtgtacgtgccaggtggacgcactgcaggg
atttcccgcaagctcccagctcctgagcgtaagcgtttgaaggaaatcctcaaggaggtc
gtgcctcacgacggcggtgccatcatccgaactgccgccgaaaacgtttctgcagaggcg
atcggtgcagacgtcaaccgtttgcacaagctctgggataagatccagcagcgcaccgag
gaagaaaaagcttccaagggtgccaagccggtgaccatgtatgaagagcccaacatgctc
gtcaaagtggtgcgtgatctcttcaatgaggatttcacctccttggttatcgatggtgat
cgtgcatggaacacggttcatgcgtatgtgcagtcggttgccccagacttgttgggccgc
ttggtgcgttttgatcgcagcgagcatgagggacgtgacgccttcgaggtgcaccgcgtc
aacgagcagattaaaaaggcactgtcgcgaaaggtttggctgccatccggtggcaccttg
gtgatcgaccgcaccgaagccatgacggtgatcgacgtgaacacaggcaagttcactggt
gccggcggaaacctcgaagagaccgtgaccaagaacaaccttgaggctgcagaagagatc
gttcgtcagatgcgtctgcgcgacctcggcggcatgatcgtggttgatttcattgacatg
gttttgccggaaaatcaggacttggtgctgcgtcgcctcaccgaagcgctaggacgcgac
cggacgcgccaccaggtatccgaggtgacgtcgttaggcctcgttcagatgacccgcaag
cgcttgggcactgggttgcttgaaacgtttgctaccgaatgcccacactgtgaaggccgc
ggcgtgatcatccacgacgatcccgtcgagcagcgagatgccgatgtggcaatggaaaag
tctcatcgtgctcgcaatgagcgcaagaagaacaagaaccacaccccatccgagcatccg
gcggccgttgccatgcacgaggagaaaaagaaggtcagtatcgaagacctcgtcgccgca
gtggtaattgaggacgatccacagccagagcctgaagtggcaccagctcctgccgacgac
gacgtgatggacatcgttagtgctgcgttggatcgtgcttatgaggaagatcctgacgag
ccctccggatctgactatctgccgctagaagaaaagccgcagacctatgccgaggcagtg
gaagaatttgagcgttctccacgccgtaagcgtaagacccgtggcaattccgtctccgat
gtgccgccgcgcaaggcagattttgaaaagccagaaccgcaaccggaacctgaggttgtc
gtggagaaagtaagctcacgtggtcgtcgtcgcgctgtacgacgcacggtagtggagact
acccccgaggtggtagcgccaacggaaactgttgaatcctcccgtgggcgtcgtcgcgct
gttcgtaagaaaatggcccctcagccagtgcaaacggaggctgtagtggaagacaaacat
gaggtttctgcaccatctcagggtggtcggggacgccgtcgtgcttcacgacgcgcaccg
cgccgttaa
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