Corynebacterium diphtheriae HC04: CDHC04_1896
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Entry
CDHC04_1896 CDS
T01696
Name
(GenBank) hypothetical protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
cda
Corynebacterium diphtheriae HC04
Brite
KEGG Orthology (KO) [BR:
cda00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
cda03016
]
CDHC04_1896
Enzymes [BR:
cda01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
CDHC04_1896
Transfer RNA biogenesis [BR:
cda03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
CDHC04_1896
Prokaryotic type
tRNA splicing ligases
CDHC04_1896
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
AEX81887
LinkDB
All DBs
Position
complement(2025809..2026969)
Genome browser
AA seq
386 aa
AA seq
DB search
MRLHNFASIVEDKTVAQAQLVADLPFVYPHVALMPDAHFGKGSSVGTVFGTLRAVIPAAV
GVDIGCGMIAVRTYLTHADIQDFALEDLRTAVEDSIPLSPGNYNGWIMDPRTEARTRELA
QLAQDTGVDLGHSKNWRQQLGSLGGGNHFIELCLDENDRVWLFLHSGSRGVGNKIAQKHI
KAAQRHCEKHWIQLADKDLAYLVEDTPEFDSYIADLHWAQHFALLNRDEMMDRFLDCVAT
WSGADREALELERINCHHNYTQRENHYGKNVWLTRKGAIKADEGDRGLIPGSMGTASYVV
EGKGYAPGLKSAPHGAGRVMSRTQAKARFTEADLAARMEGIVYRPGAEFVDEIPDAYKDI
DRVMTDAAQLVEVKHTLRQILNVKGT
NT seq
1161 nt
NT seq
+upstream
nt +downstream
nt
atgcgcctgcacaacttcgcctccattgttgaagacaagacggtggcgcaggcacaactc
gtcgctgacctgcccttcgtctacccacacgtggcgctcatgcctgatgcccactttggc
aaaggctcttcggtcggcaccgtcttcggcacgctgcgtgccgtcatcccggcggctgtc
ggcgtggacatcggctgcggcatgatcgccgtgcggacctacctcacgcacgcggatatc
caggacttcgctctcgaggacctgcgcaccgcggtcgaagattccattccgctctcgccc
ggaaactacaacggctggatcatggacccgcgcaccgaggcccgcacgcgcgagctcgcg
cagttggcccaggacaccggcgtggatctcggtcactccaaaaactggcgtcagcagctg
ggcagcttgggcggcggcaaccacttcatcgagctgtgtctcgacgaaaatgaccgcgtc
tggctgttcctgcattctggctcgcgcggcgtgggtaacaagattgcacagaagcacatc
aaggccgcgcagcgccactgcgagaagcactggatccagctcgcggacaaggacctagcc
tacctcgtcgaggatacgcccgagttcgactcctacattgcggatctccactgggcacag
cactttgcgctgctcaaccgcgatgagatgatggaccgcttcctcgactgcgtcgccacc
tggtccggcgcggatcgcgaggccctcgagctcgagcgcatcaactgccaccacaactac
acccagcgtgagaaccactacggtaagaacgtgtggctcacacgcaagggcgccatcaag
gcggacgaaggcgaccgcggcctcatccccggctcgatgggcaccgctagctacgtcgtg
gaaggcaagggctacgcgccgggcctcaagtctgcgccgcacggcgccggccgcgtcatg
tcgcgcacccaggccaaggcccgcttcaccgaggcggaccttgccgcacgcatggaaggc
atcgtctatcgtcccggcgccgagttcgtcgatgagattccggacgcctacaaagacatc
gaccgcgtgatgaccgatgccgcccagctcgtcgaggtcaagcacaccctgcgccagatc
ctcaacgtcaagggcacctaa
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