Chryseobacterium daecheongense: MUU74_03705
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Entry
MUU74_03705 CDS
T08680
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cdae
Chryseobacterium daecheongense
Pathway
cdae03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cdae00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
MUU74_03705 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cdae03400
]
MUU74_03705 (mfd)
Enzymes [BR:
cdae01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MUU74_03705 (mfd)
DNA repair and recombination proteins [BR:
cdae03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
MUU74_03705 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
Cas3-like_C_2
RecG_dom3_C
UB2H
Choline_kin_N
Motif
Other DBs
NCBI-ProteinID:
UOU99064
LinkDB
All DBs
Position
complement(744512..747877)
Genome browser
AA seq
1121 aa
AA seq
DB search
MQLKTITEKFLPELLQKEFGKEIFTQLESSQHISVKGSAGSSVSVFVAELFLTRKKNILY
LVDDKEDALYINTEMEDLLGKEKILYFPATHLEPYQVEKTQNANLVLRTEVLNKINSGKS
PKVIVAYAGALSEKVLKKEDFKAISHHIKVGDQLDFDFVDELLNHYHFQQADFVSEPGEF
SVRGGIVDVFSYSYEKPYRITFFGNEVESIKTFDIETQLSVDKVKEFQLVSNMNFSVTGS
KVSLLQLLPKESFVVSKNGVVGLQKIKSFYERSLEKFETLNKDIAHRAPQELFISDQEFL
FDYKKFKTIDFSSVAIEGLPTAEIKIEQTAQPSFHKNFELLIEDLEEKQHEGFETWISFS
TEKQKERLESIFEELEHEVPFKSFKSELHEGFVDNNHKILVYTDHQIFDRYQRYKAKNTF
AKSEQLTLKDLMSLKVGDYIAHIDHGIGKFMGLVKVNNDGKIQECFKLAYKNGDLLYVSI
HSLHKISKYNGPDGKEIVLSKLGSPAWKSLKQKTKTKVKQIAFDLIKLYAQRKTAQGFSY
SPDSYLQNELEASFIYEDTPDQEKATIDVKKDMEAVTVMDRLVCGDVGFGKTEVAIRAAF
KAATDGKQVAVLVPTTILAFQHYRSFKERLKDFPVNVSYLNRFRTAKQKSETLEALKNGK
VDIIIGTHQLVGSGVKFKDLGLLIIDEEHKFGVSVKDKLKTLKSNVDTLTLTATPIPRTL
QFSLMAARDLSVIKTPPPNRQPVDTQIVGFNEEIIRDAVSYELQRDGQVYFINNRIENLK
DIAGLIQRLVPDARVITGHGQMDGKQLEKNVLDFMEGKYDVLVSTTIVESGVDVPNANTI
FINDAQRFGMADLHQMRGRVGRSNRKAFCYLITPPFDMMTSDARKRLEAIEQFSDLGSGF
QIAMKDLEIRGAGDLLGAEQSGFINEMGFETYQKLMQEALEELKDDESFGNLFEKEEERQ
KLFKSVKEVNIDTDLELMLPDSYISNTEERLLLYQKIAEIDNEKDLQKFEMELIDRFGSL
PKEAINLLKSVSLKWLAAEIGFEKIVMKNGIFLGYFPDNPQDKFYQTEKFRHIISYLTQN
PAEAQLKEKIGKEGNQLMMRKEKVKNVDEVNILLKSILASH
NT seq
3366 nt
NT seq
+upstream
nt +downstream
nt
atgcagttaaaaaccattaccgaaaagtttcttccggagttgcttcaaaaagaatttggg
aaagaaattttcactcagttggaaagcagtcaacatatttctgtaaaaggaagtgccggt
tcctccgtttcagttttcgtggccgaactttttttaacccggaagaaaaatattctgtat
ctggtggatgataaagaagatgcactttacattaatacggaaatggaagatcttttagga
aaagagaaaattctttatttcccggccacgcatctggaaccttaccaggtagagaaaaca
cagaatgcaaatctggttttaagaacagaagttttaaataagatcaattcaggtaaatct
cccaaggttattgtagcttatgcaggggctttatcagaaaaagtattgaaaaaagaagat
tttaaggccatttcccatcatataaaagtaggggatcagctggatttcgattttgtggac
gaattgcttaatcactatcattttcagcaggctgattttgtttctgaacctggggagttc
tccgtaagaggaggaattgtggatgtattttcgtattcctatgaaaagccttatcgtatc
acatttttcggaaatgaggtggaaagtataaagacttttgatatagaaactcagctctca
gtagataaagtgaaagaatttcagttggtttccaacatgaatttttctgtaacgggttcc
aaggtatctttattacagcttttgcctaaagaaagctttgtggtttctaaaaacggagtg
gttggacttcagaaaattaaaagtttctatgagagatctttagagaaatttgaaactctg
aataaggacattgcccatagagcgccacaggaattgttcatttctgaccaggaattttta
tttgattataaaaaatttaaaaccattgattttagtagcgttgctattgaaggattgcca
acagcggagatcaagattgaacaaacggcacagccctcctttcataaaaattttgaactg
ctgatcgaagatctggaagaaaagcagcatgagggctttgaaacgtggatctctttttca
acagaaaaacaaaaagaaagactggagtctatttttgaggagcttgagcatgaagttcct
tttaaaagttttaaatccgaactgcatgaaggttttgtagataataatcataaaattttg
gtgtatacggatcatcagatttttgaccgttaccaaagatataaggcgaaaaatacgttt
gccaaatccgaacagcttactttgaaagacctgatgtctttgaaagtaggggattatatt
gcccatattgatcatggaatcggaaaattcatggggttagtgaaagtaaataatgacgga
aagatccaggaatgttttaaactggcctataaaaatggggacttgttatatgtaagtatc
cattcccttcataaaatttccaaatataatggtccggatggaaaggagattgttttaagt
aaactagggtctcctgcctggaaatctttaaaacaaaagacgaaaacgaaggttaagcaa
attgccttcgatctcatcaagctgtatgcacaaagaaaaacggcacaaggtttttcgtat
tcgccggattcttatttacaaaatgagctggaagcaagttttatttatgaagacactccg
gatcaggaaaaggctacgattgatgtgaaaaaggacatggaagctgttacggtgatggac
agactggtttgcggagacgtaggttttggtaaaacggaagttgctattcgtgctgcgttt
aaagccgcaacagatggaaaacaggttgcggttttggttcctactacgattttggcattt
cagcattacaggagctttaaagaaagattgaaggatttcccagtgaacgtttcttattta
aacagattcagaacggctaaacagaaatcggaaaccctggaagctttaaaaaatggaaaa
gtggatattatcataggaacccatcaattggtcggaagtggtgttaaatttaaagattta
ggcttactgatcattgatgaagagcacaagttcggagtttcggtgaaagataaactgaaa
acactgaaaagtaatgtggacacccttactttaacggctactcctattccgagaactttg
cagttttcgctgatggcggcaagagatttgtccgttatcaaaacaccaccgccgaacagg
cagcctgtagatacacagatcgttggattcaatgaagaaattatccgtgatgcggtttct
tatgaactgcagagagatggacaggtatattttattaataacagaattgaaaacctgaaa
gatattgcagggcttatccaaaggctggttcctgatgctagggtgattacgggacatggg
cagatggatggaaagcagctggagaaaaatgtcctggatttcatggaaggaaaatatgat
gtccttgtttctacgacaattgttgaaagtggggtggatgttcctaatgctaacacgata
ttcattaatgatgcacagcgtttcggaatggcggatcttcaccagatgagaggaagggta
ggacgaagcaacaggaaagcattttgttaccttatcacgcctccgtttgacatgatgaca
tccgatgcgagaaaaagactggaagccattgaacaattctcagatttaggtagcggtttc
cagattgcgatgaaagaccttgaaatccgtggagccggagatttattgggagcagaacaa
agcggctttatcaatgaaatgggttttgaaacgtatcagaaattgatgcaggaagcattg
gaagagttgaaagatgatgaaagcttcggaaacttgttcgagaaggaggaagagagacag
aaattattcaaatcggtgaaagaagtgaatattgataccgatctggaactgatgttgccg
gattcttatatctccaatacggaagaaaggctattgctttatcagaaaattgcagaaatt
gataatgaaaaagatctccagaaatttgagatggaactgatagaccgtttcggaagtttg
ccaaaagaagccatcaatctgttgaaaagtgtttcgttgaaatggctggctgctgaaata
ggttttgagaaaattgtgatgaagaacggaatattcttagggtattttccagataatcca
caggataagttttaccagacggaaaagttcagacatatcatcagttatttgacccaaaat
cctgcagaagcccaactgaaggagaaaatcggcaaggagggtaatcagctgatgatgaga
aaagaaaaggtaaaaaacgtggatgaggtgaatattttgttgaaatcaatccttgcttcc
cattaa
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