Chryseobacterium daecheongense: MUU74_05135
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Entry
MUU74_05135 CDS
T08680
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
cdae
Chryseobacterium daecheongense
Pathway
cdae03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cdae00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MUU74_05135 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cdae03019
]
MUU74_05135 (rnr)
03016 Transfer RNA biogenesis [BR:
cdae03016
]
MUU74_05135 (rnr)
Enzymes [BR:
cdae01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
MUU74_05135 (rnr)
Messenger RNA biogenesis [BR:
cdae03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
MUU74_05135 (rnr)
Transfer RNA biogenesis [BR:
cdae03016
]
Prokaryotic type
tRNA degradation factors
MUU74_05135 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
OB_Dis3
S1
OB_RNR_1st
S1CSD-TOTE-2
Rrp44_S1
Motif
Other DBs
NCBI-ProteinID:
UOU99344
LinkDB
All DBs
Position
1050093..1052243
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AA seq
716 aa
AA seq
DB search
MKKRKYISHKNDMKLMEIGRLILRFMNENPSKIYNYKQIADGIDYKNPRQRELVIQALHK
LQGSEKIKEAEKGKYIVNLNIAGTLTGVIDFNQSGNAYVNVEGLEDDIFIHSKNVKDALQ
GDKVLIITYHYKGKKLEGSVLEVLERARTEFVGTFQVINHKDFGFVVCDKKSINTDIFIP
KTKFGGAENGDKVIVKMTEWKPGDKNPEGEIIQVLGAPGEHETEIHSILAEYGLPYEFPN
EVERDADKIDRSITDEEVAKRWDMRDICTFTIDPKDAKDFDDALSIRKLENGNWEIGVHI
ADVSHYVVPGTILDDEAYQRATSVYLVDRVVPMLPEVLSNDVCSLRPNEDKYTFSAVFEL
NNNAEIQKQWFGRTVIHSNRRFTYEEAQERIETKQGDLAEEILVLDRLAKIMRAERIRKG
AITFDRSEVRFNLDENNEPVGVYFKISKDSNHLIEEFMLLANRKVSEFVSLSRKGEITNN
TFIYRVHDDPDPAKLEALRDFVSTFGYKMNLANTKKVAESLNKLLHDVKGKGEENMIETL
AMRSMSKAIYSTEPIGHYGLGFEYYTHFTSPIRRYPDLLAHRLLQHYLDGGKSPSQHELE
EKAKHCSSMERLAADAERDSIKFMQVKFMEKHIGEVFTGVISGVAEFGFWVEIPENGAEG
LIKLRDLVDDSYMYDAKTHAVYGTRTGNKYQLGDQVQIKVVKANLIQKQLDFKIVD
NT seq
2151 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaaaagaaaatatataagtcataaaaatgatatgaaactgatggagatcggaagg
ctgatcctgcgtttcatgaatgaaaatccgtctaagatctataattataagcagattgct
gacggaatagattataaaaatccaagacaaagagagctggtgatccaggctttgcataaa
ttacagggttctgaaaaaattaaagaagccgaaaaaggtaaatatattgtcaatcttaat
attgccggtacattaacaggtgtcatagatttcaatcagtccggtaatgcttacgttaat
gtggaaggattggaggatgatattttcatccattccaaaaatgtgaaggatgcattgcag
ggagacaaagtattaataataacctatcattataaaggtaaaaaactggaaggttctgtt
ttagaggttttggaaagagccagaaccgaatttgtaggaacattccaggtgatcaatcat
aaagatttcggatttgtggtgtgtgataaaaagtctatcaatacagatatttttatcccg
aaaacaaaatttggaggtgctgaaaacggtgacaaggtcatcgtaaaaatgacagaatgg
aaaccgggagacaaaaacccggaaggagaaattatccaggttttaggagctccgggagaa
cacgagaccgaaatccactctattttagcggaatatggtttaccatacgagtttccaaat
gaagtggaaagagatgcggataaaatagaccgaagcattaccgatgaggaagttgctaaa
cgttgggatatgcgtgatatttgcacttttactatagaccctaaagatgcgaaggacttt
gacgatgctttatccataagaaaattagaaaatgggaactgggaaatcggggtgcatatt
gcagatgtttctcattatgtggtacccggaaccattttagatgacgaagcctaccaaaga
gcgacttcagtatatttggtggatcgtgttgttcctatgttaccggaagttttaagtaat
gatgtttgctcccttcgtccaaacgaagataaatatacattttcagccgtttttgaactg
aataacaatgctgaaatccagaaacaatggtttggtagaacggtgatccattcaaacaga
agattcacgtatgaagaggctcaggaacgtattgaaaccaagcagggagatttggcagaa
gaaattcttgtgttggatagactggccaaaatcatgcgcgcagagcgtatcagaaaaggg
gccattactttcgacagaagtgaagtaagatttaatcttgatgaaaataatgaaccggta
ggagtttactttaaaataagtaaagactctaaccatttgatcgaggaattcatgctgctg
gcgaatagaaaagtttctgaatttgtttcattatccagaaaaggagaaattaccaacaat
actttcatttacagggttcacgatgacccggatcctgccaaactggaagcgttgagagac
tttgtttctactttcgggtacaaaatgaatcttgccaatacgaaaaaagtagcagaatca
ttgaataaattacttcatgatgtcaaaggaaaaggtgaagagaatatgatcgaaactttg
gcaatgagaagtatgagcaaagcgatttattctacggaacctattggtcactatggtttg
ggatttgaatattatacccactttacctctcctatccgtcgttatccggatttattggca
caccgtcttttgcagcactatttggatggaggaaaatctccgagtcaacatgagctggaa
gaaaaggctaaacattgcagttctatggaaagactggctgctgatgcggaaagagattcc
attaagttcatgcaggtgaaattcatggaaaaacatatcggtgaagttttcacaggtgta
atttcaggagttgccgaatttggtttctgggtagaaattcctgaaaacggtgcagaagga
ttgattaagttgagagatttggtagatgattcctatatgtatgatgccaaaacacatgcg
gtttacgggacaagaacagggaataaatatcaattgggagatcaggttcagatcaaagtg
gtaaaagccaatctaattcaaaagcaactggactttaagatagttgattaa
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