Chryseobacterium daecheongense: MUU74_07645
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Entry
MUU74_07645 CDS
T08680
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
cdae
Chryseobacterium daecheongense
Pathway
cdae03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cdae00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
MUU74_07645 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cdae03021
]
MUU74_07645 (rpoC)
03400 DNA repair and recombination proteins [BR:
cdae03400
]
MUU74_07645 (rpoC)
Enzymes [BR:
cdae01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
MUU74_07645 (rpoC)
Transcription machinery [BR:
cdae03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
MUU74_07645 (rpoC)
DNA repair and recombination proteins [BR:
cdae03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
MUU74_07645 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RnfC_N
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
UOU99814
LinkDB
All DBs
Position
1575353..1579618
Genome browser
AA seq
1421 aa
AA seq
DB search
MSNKNKSSRFNKITIGLASPESILQESRGEVLKPETINYRTHKPERDGLFCEKIFGPVKD
YECACGKYKRIRYKGIVCDRCGVEVTEKKVRRERIGHINLVVPIAHIWYFRSLPNKIGYL
LGIPSKKLDMIIYYERYVVIQQGIAKKLDGSDFEHMEFLTEEEYLDIMETLPVENQYLDD
SDPNKFIARMGAEAVEDLLKRIDLDALSFDLRHKAHNEGSKQRRTEALKRLNVVEALRGA
NTRMINKPEWMIMRVLPVIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLLEIK
APEVILRNEKRMLQESVDSLFDNTRKSSAVKSESNRPLKSLSDSLKGKQGRFRQNLLGKR
VDYSARSVIVVGPNLQLHECGIPKDMAAELYKPFIIRKLIERGIVKTVKSAKRIIDRKEP
VVYDILENVMKGHPVLLNRAPTLHRLGIQAFQPKMIEGKAIQLHPLVTTAFNADFDGDQM
AVHLPLGPEAILEAQLLMLGSQNILNPANGSPITVPSQDMVLGLYFMTKEASSTEDYKVK
GEGLAFYSPEEAEIAYAEGKVSLNAKVRCKLPVKENGELVTRLIETTVGRILFNQIVPKQ
VGYINELLTKKSLRNVIGKILADTDFPTTVKFLDAMKDLGYSNAFKGGLSFSLGDIVVPA
EKKQMIAQAVENVDEIRANYNMGLITDTERYNQVIDVWTNTNAGLTEMIMSRMKSDQGGF
NSVYMMLDSGARGSKEQIRQLSGMRGLMAKPQKAGSTGAEIIENPIVANFKEGLSILEYF
ISTHGARKGLADTALKTADAGYLTRRLVDVAQDVIVTEDDCGTLRGTEVTALKKNDEIVE
KISERILGRVSLHNIYDPETDELIAEADQVINEVLAKRIEEAGLEAVEVRSPLTCEAKKG
ICAKCYGRNLATGKVIHMGEAVGVIAAQSIGEPGTQLTLRTFHQGGTAGNVSENPSIVAR
RDGIVEMDEVRTITSEDENGNTAEVVVSRSTEFRLVADNETRTPLMIANVPYGSVLAVKP
GDKVKKGDLICKWDPYNAVIIAETSGKVEYEDIIQGVSFQLEIDEQTGFEEKVISESRNK
KAVPTLRVVDSKGVEQKAYNLPVGAHLMVNDGEKIKAGKILIKIPRKSAKAGDITGGLPR
VTELFEARNPSNPAVVTEIDGVVSYGKIKRGNRELIVEAKTGERKVYLVKLSNQILVQEN
DFVRAGAPLSDGSITPEDILRIKGPTAVQEYLVNEIQEVYRLQGVKIDDKHFEIIVRQMM
TKVEIVDGGDTQFLEGALEHKYDFLEENNRVFGLKVVVDAGDSKEFKPGQMITARELRDE
NSKLKREDQALVVVREALPATATPVLQGITRAALQTKSFMSAASFQETTKVLNEAAVAGK
VDDLNGLKENVIVGHRIPAGTGLKEYQNVIVGSKKEFEDIN
NT seq
4266 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaataaaaataaatcaagtagatttaataaaataaccatcggtttagcttcaccg
gaatctattcttcaggaatcgagaggagaggttttaaagccggaaactattaactacaga
acacacaagcctgaaagagacgggttgttctgtgaaaaaatatttggtcctgtaaaggat
tacgaatgtgcttgtggtaaatataagagaatccgttataaagggattgtttgtgaccgt
tgtggggtagaagttactgagaaaaaagtaagaagagagagaatcgggcacattaacctt
gtagttccaattgcgcacatttggtatttccgttcattgccaaacaaaatcggatacctt
ttaggaattccttctaagaaattagatatgatcatctactacgaaagatatgtggtgatc
cagcagggtattgctaaaaaattagatggttctgattttgaacatatggaattcttaaca
gaagaagagtaccttgatattatggaaactcttcctgtggaaaaccagtatcttgatgat
tcagatccaaacaaattcatcgccagaatgggggctgaagctgttgaggatctattaaaa
agaatcgatcttgatgcactgtctttcgacttaagacacaaagctcacaacgaaggttct
aagcaaagaagaactgaggctttaaaaagattgaacgttgtagaagcattgagaggtgct
aatacaagaatgatcaacaagcctgagtggatgatcatgcgtgtgcttcctgttatcccg
ccagaactaagaccattggttccattggatggtggacgtttcgcaacttccgatttgaat
gacctttatagaagagtaattatcagaaataaccgtttgaagagattattggagatcaaa
gctccggaagtaatcttgagaaacgagaagcgtatgcttcaggaatcagtagattcatta
ttcgataatacaagaaaatcttcagcagtaaaatctgaatctaacagaccattgaaatca
ctttcagattcattgaaaggtaagcaggggcgtttccgtcagaacttattaggaaaaagg
gttgactactctgcgcgttcggtaattgttgtagggccaaacttacagcttcacgagtgt
ggtattcctaaagatatggctgcggaattgtacaaaccgtttatcattagaaaactaatt
gaaagaggtattgtaaaaacagtaaaatctgcaaagagaattatagatagaaaagaaccc
gtagtatatgatatccttgaaaatgtgatgaaaggtcacccggtactattgaacagggca
cctacgcttcacagattgggtattcaggctttccaacctaagatgatcgaaggtaaggca
atccagctacacccattggtaacaacggcattcaacgccgacttcgatggtgaccagatg
gcggtacacttaccgttaggaccagaagcgatccttgaagctcagttattgatgctaggt
tctcagaatatcttgaaccctgcaaacggttctcctattaccgtaccttctcaggacatg
gtacttggtctatatttcatgactaaagaagctagttctactgaagattataaagtaaaa
ggtgaaggtttagcattctactctcctgaagaagcagaaattgcttatgcagaaggaaaa
gtttctttaaatgctaaggtaagatgtaaactaccggttaaagaaaacggagaattagta
acaagattaatcgaaactactgttggtagaattctattcaaccagattgtacctaaacag
gtaggatatatcaatgaacttttaactaaaaagtcattgagaaacgttatcggtaagatc
cttgctgatacagacttccctacaaccgtgaagttcttggatgctatgaaagatctagga
tattcaaacgcattcaaaggaggtctttcattctcattaggagacatcgtggttcctgct
gagaagaagcagatgattgcgcaggctgttgaaaatgtagatgaaattagagccaactat
aacatgggtcttattacagatacagaacgttataaccaggtaatcgacgtttggacaaac
accaatgctggattaactgaaatgatcatgagcagaatgaaatctgatcaaggtggattc
aactctgtatatatgatgcttgactctggagcaaggggatctaaagaacagatccgtcag
ttatcagggatgagaggtttgatggcaaaaccgcaaaaagccggatctaccggagcggaa
atcatcgaaaacccaatcgttgcgaactttaaagaaggtctttcgatccttgagtacttt
atctctacccacggtgcacgtaaaggtcttgcggataccgctcttaagacagccgatgcc
ggttacttaacgagaagattggtagacgttgcacaagacgttatcgttacagaagacgat
tgtggtactttaagaggtactgaagttactgcacttaagaaaaatgacgagatcgttgaa
aaaatctctgaaagaatcttaggtagagtttctcttcataacatttatgatcctgaaaca
gacgaattaatcgctgaagcagatcaggtaatcaacgaagtattggcgaagagaatcgaa
gaagcaggattagaagcagttgaggttcgttcaccattaacttgtgaagctaagaaaggt
atctgtgcgaaatgttacggaagaaacttggcaacaggtaaagtgatccatatgggtgaa
gcagtaggtgtaattgcagcacaatccatcggggaaccgggaactcagttaacactgaga
accttccaccaagggggtactgcaggaaacgtatcagaaaacccatcaatcgttgcaaga
agagacggtatcgttgaaatggatgaagtaagaaccattacttctgaagatgaaaatggt
aacactgctgaggttgtagtttcccgttcaacagaattcagattggttgcggacaacgaa
acaagaactccgctaatgattgccaacgttccttacggttccgtattggcagtgaaacct
ggtgataaagtgaagaaaggagatctgatctgtaagtgggatccgtataacgcggttatc
attgctgaaacatcaggtaaggtagaatatgaagatatcatccaaggggtttcattccag
cttgaaattgacgaacaaacaggattcgaagaaaaagtaatctctgaatcaagaaataag
aaagccgtacctacattaagagtagtagattctaaaggagttgagcaaaaagcttacaac
ttaccggtaggagctcacttaatggttaatgacggtgaaaaaatcaaagcaggtaaaatc
ttaatcaagatcccgagaaaatctgcaaaagcaggggatatcaccggaggccttccgaga
gttaccgaattattcgaagcaagaaacccttcaaacccggcggtggttacagaaatcgat
ggggtggtttcttacggaaaaattaagagaggtaacagagaacttattgttgaagcgaaa
accggagaaagaaaagtttacttagtgaaactttccaaccagatccttgttcaggagaat
gacttcgtaagagcaggagctccgctttctgatggttctattacaccggaagatatcttg
agaatcaaaggtccaactgcggttcaggaatatcttgttaatgagatccaggaagtttac
cgtctacaaggggtaaaaattgacgataagcacttcgaaatcatcgtaagacagatgatg
acgaaagtagagattgttgatggaggtgatactcaattccttgagggtgctttagagcat
aagtatgacttcttagaagaaaacaacagagtattcggtcttaaagtagtagttgacgct
ggagattctaaagaattcaagccaggtcagatgattacagcaagagaattaagagacgaa
aactctaagctgaaacgtgaagatcaagctttagtggtggtaagagaagcacttcctgct
acagcaacacctgtattgcaagggattacaagagcggctcttcaaactaaatcattcatg
tctgcagcatcgttccaggaaactacaaaagttcttaacgaagcggctgttgcaggtaaa
gtagatgatctgaacggtcttaaagaaaatgtaattgtaggacacagaattcctgcaggt
acaggtcttaaagaatatcagaatgtaatcgttggttctaagaaagaattcgaggatatt
aactaa
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