Anaerocellum danielii: SOJ16_000799
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Entry
SOJ16_000799 CDS
T09647
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
cdan
Anaerocellum danielii
Pathway
cdan03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cdan00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SOJ16_000799 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cdan03021
]
SOJ16_000799 (rpoC)
03400 DNA repair and recombination proteins [BR:
cdan03400
]
SOJ16_000799 (rpoC)
Enzymes [BR:
cdan01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SOJ16_000799 (rpoC)
Transcription machinery [BR:
cdan03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SOJ16_000799 (rpoC)
DNA repair and recombination proteins [BR:
cdan03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SOJ16_000799 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
7TMR-HDED
Motif
Other DBs
NCBI-ProteinID:
WPX09573
LinkDB
All DBs
Position
869810..873301
Genome browser
AA seq
1163 aa
AA seq
DB search
MDLFNFDAIKISLASPEKIREWSRGEVKKPETINYRTLKPEKDGLFCEKIFGPTKDWECH
CGKYKKVKYKGVVCDKCGVEVTKAKVRRERMGHIELAAPVSHIWYFKGVPSRMGLILDMT
PRNLEKVLYFAAYVVIDPGEVPNLEKKQILSEKEYRELKEKYGDRFKAGMGAEAIKELLK
EIDLDKLSQELRQELETATGQKKLKIIKRLEVVEAFRKSGNRPEWMILDVIPVIPPELRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKKLMDLGAPDIIIRNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPELKIYQCGLPKE
MALELFKPFVMKKLVEKGICNNIKNAKKAVERQRGEVWDILEEVIKDHPVLLNRAPTLHR
LGIQAFEPVLVEGRAIRLHPLVCTAYNADFDGDQMAVHVPLSAEAQAEARFLMLSANNLL
KPADGKPIVVPTQDMVLGIYYLTLEKKGDKGEGMIFSSEEEALLAYEHKVVGLHARIKVK
RTAEANGKVISGLVETTVGKIILNQVIPQDLGFVDRSKKENLLKYEIDTLVDKKMLGKII
DRCIKVYGNTRTAEILDEIKELGFKFSTRGAITISVSDMVIPEIKQKLIAEAEQKVENIE
KLYRHGLISDEERYEQVISIWNETKDKLTEELIQNLDEFNPIFMMANSGARGSKNQISQL
AGMRGLMANPSGKTIEMPIKSNFREGLNVIEFFISTHGARKGLADTALRTADSGYLTRRL
VDVAQDIIVREEDCGTDKGIWVEEIRDGTEVIETLEERIIGRYAASDIVDEKTGEVIVRK
NELITEEIAKKIIDAGINKVYVRSVLECKTRYGVCTKCYGLDLGTGKPVNVGEAVGIIAA
QAIGEPGTQLTMRTFHTGGIAGQDITQGLPRVEELFEARKPKGVAVISEIEGYVSIKEDK
KRTITVRNDNGEERTYEIPYGARLKVNDGDYVQAGDELTEGSINPHDLLRIKGPRGVQSY
LLAEVQKVYKMQGVDINDKHIEIIIRQMMKKVKIEDSGDTELLPGDIVEIYRFEEENDKA
IAEDKRPALGRRVLLGITKAALSTESFLSAASFQETTRVLTDAAIKGKVDPLIGLKENVI
IGKLIPAGTGMAKYRNIVIEENQ
NT seq
3492 nt
NT seq
+upstream
nt +downstream
nt
atggacttgttcaatttcgatgctattaaaatcagtcttgcttctcctgagaagataaga
gaatggtcgcgcggtgaggtaaaaaaacccgagactataaactatagaacgctcaagcct
gaaaaggatgggcttttctgtgaaaagatttttggaccgacaaaagactgggaatgccac
tgtggaaaatataaaaaggtcaaatataagggtgttgtttgtgacaagtgcggtgttgaa
gtgacaaaagcaaaggtaagacgtgagaggatggggcacattgagcttgctgcccccgtc
tctcacatctggtatttcaaaggtgttccaagcaggatgggtcttatcctggacatgacc
ccgcgaaatttagaaaaggttttgtattttgctgcatatgtggtaattgaccccggcgaa
gtaccaaatttggaaaagaaacagattctctctgaaaaagagtacagggagctaaaagag
aagtatggcgacaggtttaaggcaggaatgggcgcagaggcaatcaaagagcttttgaaa
gagattgaccttgacaagctatcgcaggagctcaggcaagaacttgagacagcaacaggc
cagaaaaaactaaaaataatcaaaagacttgaggttgttgaagcttttaggaagtctggc
aaccgtcctgaatggatgatacttgatgtcatacctgtcatcccccctgaacttagaccc
atggtccagcttgacggcggaagatttgcaacatcagacctaaatgacctttacagaagg
gtaataaacagaaacaacagactcaaaaaactcatggacttaggtgcaccggatataatt
attagaaatgaaaagagaatgcttcaagaagcagttgatgcacttatagacaatggaaga
agaggaagacctgtaacaggtcctggcaacagaccgctaaagtcactttctgatatgctc
aaggggaagcagggaaggttcagacagaaccttttgggaaaaagagttgactattcagga
cgttctgttatagttgtgggtccagagcttaagatttaccagtgtggtcttccaaaagag
atggctttagagctcttcaaaccatttgtcatgaagaagcttgttgaaaaaggaatttgc
aacaacataaaaaatgcaaaaaaagctgttgaaagacagagaggtgaagtttgggatata
ttagaagaagtaataaaagaccatccagtgctactaaaccgagcacctactttgcatagg
cttggtattcaggcctttgagccggtacttgttgaaggaagagcaataagacttcatcca
cttgtttgtacagcttacaatgctgactttgacggcgaccagatggcggtacacgttcca
ctatctgccgaggctcaggctgaagccaggtttttgatgttatctgcaaataacctatta
aaaccagcggatggcaaacctattgtagttccgacccaggatatggttttgggaatttac
tacctcactcttgaaaagaagggtgacaagggtgaggggatgatattctcatcagaagaa
gaagcgcttttagcgtatgaacacaaagttgtcggacttcatgcaaggataaaggttaaa
agaacagcagaagcaaacggtaaagttatctctggacttgttgagacaacagttggcaaa
atcatattaaatcaagtaataccacaggaccttggttttgttgatagaagcaagaaagaa
aatcttctcaagtatgaaattgacacacttgttgacaaaaagatgcttggaaaaattatt
gacagatgtataaaagtttatggaaatacccgcaccgcagagatactggatgagataaag
gaacttggatttaaattttccacaagaggagcaataactatctcagtatctgatatggtt
attccagaaatcaagcaaaagctcatagcagaggcagaacaaaaggttgagaacattgaa
aaactatacagacacggtttgatatctgacgaagaaagatatgaacaagtaatttctatc
tggaacgagacaaaagacaagctcacagaagaacttatccaaaatcttgatgagtttaat
ccaatatttatgatggcaaactctggtgcaagaggttctaaaaaccaaatatcacagctt
gctggtatgaggggactgatggcaaatccgtctggtaagacaatagagatgccgattaaa
tcaaacttcagagaaggacttaatgttatagagtttttcatctcaacacacggtgcacga
aaagggcttgccgacacagcgctcagaactgcagattcaggatatttaacaagaaggctt
gtagatgttgcgcaagatataattgtaagggaagaggactgtggtacagacaaaggtata
tgggttgaggagataagagatgggacagaagtaattgagacacttgaagagagaattatt
ggaagatatgcagcttctgatattgttgatgaaaaaacaggtgaagtaatagtaagaaag
aatgagcttattacagaagagatagcaaagaagataatagatgcaggaataaacaaggta
tatgtaaggtcagttttagagtgcaaaacaagatacggtgtttgtacaaaatgttatgga
cttgaccttggtacaggtaagccagtgaatgttggtgaggcagttggtattattgcagca
caggcaataggtgagccgggtactcagcttacaatgagaacattccacacaggtggtatt
gctggacaggacattacgcaaggtctcccaagagttgaggagctatttgaggcgagaaaa
ccaaagggtgttgctgtgatttctgaaatagaaggatatgtttcaataaaagaagataaa
aagaggacaataacagtcaggaatgacaatggtgaagagagaacgtatgagataccgtac
ggagcaagattaaaagtaaacgatggcgattatgttcaggcaggggatgaactaacagaa
ggttcaataaatccgcacgaccttttgaggataaaaggaccaagaggtgttcagagctat
cttttagcagaggttcagaaagtttataagatgcagggcgttgacataaacgacaagcac
atagagataataatcagacagatgatgaagaaggtcaagatagaagactctggtgataca
gaacttttgcctggcgacatagtagagatatacaggtttgaagaagaaaacgacaaagcg
atagcagaagacaaacgtcctgcacttggcaggagagtgctccttggcataacaaaagca
gcactctctactgagtcgtttttatctgctgcatcattccaggagacgacaagagtattg
acagatgcagcaataaaagggaaggttgatcctctaataggtcttaaggaaaatgtcatc
attggtaaacttattcctgcaggaactggaatggcaaaatatagaaatattgtgattgaa
gaaaatcaatag
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