Cedecea davisae: ACG1VR_07945
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Entry
ACG1VR_07945 CDS
T11677
Symbol
sbcB
Name
(GenBank) exodeoxyribonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
cdav Cedecea davisae
Pathway
cdav03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cdav00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
ACG1VR_07945 (sbcB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cdav03400
]
ACG1VR_07945 (sbcB)
Enzymes [BR:
cdav01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
ACG1VR_07945 (sbcB)
DNA repair and recombination proteins [BR:
cdav03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
ACG1VR_07945 (sbcB)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
ACG1VR_07945 (sbcB)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
ACG1VR_07945 (sbcB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ExoI_SH3
ExoI_C
RNase_T
Motif
Other DBs
NCBI-ProteinID:
XJO96115
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All DBs
Position
complement(1599220..1600647)
Genome browser
AA seq
475 aa
AA seq
DB search
MSDSASLATFLFHDYETFGKSPSLDRPAQFAAIRTDGEFNVIGEPEVFYCKPADDYLPQP
EAVMITGITPQQALARGDNEAAFAKRIHAIFTVPKTCVVGYNNVRFDDEVTRNIFYRNFY
DPYAWSWQNDNSRWDLLDVMRACYALRPEGIVWPENEDGLPSFRLEHLTKANGIEHANAH
DAMSDVYATIAMAQLVKTRQPRLFDYLYSHRSKQKLQTLIDIPQMKPLVHVSGMFGAARG
NTSWIAPLAWHPDNRNAVIMVDLAGDISPLLELDADTLRERLYTPKAALGDTAAVPIKLV
HLNKCPVLAVANTLRPEDAERLGINRQQCLDNLKVLREHPEVREKVVALFAEAEPFVPSD
NVDAQLYNGFFSDADRAAMRIVLQTDPQNLPALDITFADKRIEKLLFNYRARNWPGTLSE
DEQNRWLQHRQEVLSQEALQAYAQELEALYNQHEGDKEKLALLKALFEYAQYLVG
NT seq
1428 nt
NT seq
+upstream
nt +downstream
nt
gtgtctgactccgcatcgcttgctacatttctgtttcacgattacgagaccttcggcaaa
agcccctccctggacaggccggcgcagtttgctgccattcgaaccgatggcgaattcaac
gttattggcgagcccgaagtgttttactgcaagcctgcggatgactacctgccccagccg
gaagccgtgatgataaccgggataacgcctcagcaggcgctggcccggggcgataacgaa
gcggcttttgcaaaacgcattcacgctatttttaccgtgccgaagacctgcgtggtgggt
tacaacaatgtgcgcttcgacgatgaagttacccgcaatatcttttaccgtaacttctac
gatccgtacgcctggagctggcaaaacgataactcgcgctgggacctgctggacgtgatg
cgcgcctgttatgccctgcgcccggaaggcattgtctggccggaaaacgaagacgggcta
ccgagcttccgtcttgagcatttgaccaaagctaacggaattgaacacgccaacgcccac
gacgcgatgtccgatgtgtacgcaactattgctatggctcaactggtgaaaacccgccag
ccgcgtctgttcgactatctctacagccaccgctcgaagcaaaaactgcaaacgctgatt
gatattccgcaaatgaagcccctggttcacgtttcgggcatgtttggcgccgcacgcggg
aataccagctggattgcgccgctggcctggcatccggataaccgcaatgcggtgattatg
gtggatttggccggggatatttctccgctgctggagctggacgccgatacgctgcgcgag
cgcctgtatacgccaaaagcggcgctgggcgatacggcagcggtgcccattaagctggta
catctgaataaatgcccggtgcttgcggtcgctaataccctgcgcccggaagacgccgaa
cgcctggggatcaaccgccagcagtgtctcgataatttgaaagtgctgcgcgagcaccct
gaagtacgcgagaaggtagtcgccctgtttgccgaggcagagccttttgttccttctgat
aacgtagacgcccagctgtataacggcttcttcagcgatgcagaccgcgctgcaatgcgc
attgtgctgcaaaccgacccacaaaaccttccggcgctagatatcaccttcgccgacaaa
cgtattgagaagctgctcttcaactaccgggcgcgtaactggccgggcacgttgagcgaa
gacgagcagaaccgctggctacagcatcgccaggaagtgctttctcaggaggctctgcag
gcctacgcccaggagcttgaggcactttacaaccaacatgaaggcgacaaagagaagctg
gcgttactcaaagcgctgttcgaatacgctcaatatctggtgggttaa
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