Cedecea davisae: ACG1VR_21780
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Entry
ACG1VR_21780 CDS
T11677
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
cdav Cedecea davisae
Pathway
cdav03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cdav00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
ACG1VR_21780 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cdav03021
]
ACG1VR_21780 (rpoC)
03400 DNA repair and recombination proteins [BR:
cdav03400
]
ACG1VR_21780 (rpoC)
Enzymes [BR:
cdav01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
ACG1VR_21780 (rpoC)
Transcription machinery [BR:
cdav03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
ACG1VR_21780 (rpoC)
DNA repair and recombination proteins [BR:
cdav03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
ACG1VR_21780 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
XJO94395
LinkDB
All DBs
Position
complement(4554392..4558615)
Genome browser
AA seq
1407 aa
AA seq
DB search
MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL
PSRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLERRQILTEEQYLDALEEFGDEFDAKM
GAEAIQALLKSMDLEQECETLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERIYRAG
LASLHARVKVRITEYEKDAQGTFVAKTSLIDTTVGRAILWMIVPKGLPFSIVNQALGKKA
ISKMLNTCYRILGLKPTVIFADQTMYTGFAYAARSGASVGIDDMVIPEKKYEIISEAEAE
VAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRNGEEEQQVSFN
SIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTLEGITMTPVIEGGDVKEPLRDRVL
GRVTAEDILKPGTADILVPRNTLLHEQWCDLLEANSVDSVKVRSVVGCETDFGVCAHCYG
RDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRSAAESSIQVKNKGSIKL
SNAKSVVNSTGKLVVTSRNTELKLIDEFGRTKESYKVPYGAVMAKGDGEQVAGGETVANW
DPHTMPVISEVSGFIRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKI
VDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGIQISAGDALARIPQESSGTKDITGGLPR
VADLFEARRPKEPAILAEISGIISFGKETKGKRRLVISPIDGSDAYEEMIPKWRQLNVFE
GERVERGDVVSDGPESPHDILRLRGVYAVTRYITNEVQDVYRLQGVKINDKHIEVIVRQM
LRKATIVNAGSSDFLEGEQAEYSRIKIANREIEANGKINVTFARDLLGITKASLATESFI
SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRAAGEVPA
APQVTAEDATASLAELLNAGNLGGNDE
NT seq
4224 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttattaaagtttctgaaagcgcaaactaaaaccgaagagtttgatgcgatc
aaaattgctctggcttcgccagacatgatccgttcatggtctttcggtgaagttaaaaag
ccggaaaccattaactaccgtacgttcaaacctgagcgtgacggcctgttctgcgcccgt
atttttgggccagtaaaagactacgagtgcctgtgcggtaagtacaagcgcctgaaacac
cgtggtgttatttgtgagaagtgtggcgtagaagttacccagactaaagttcgtcgtgag
cgtatgggtcacatcgaactggcatctccaactgcccacatttggttcctgaaatctctg
ccatcccgtatcggcctgctgctggatatgccgctgcgtgatatcgaacgcgtactgtac
ttcgaatcctatgtggttatcgaaggcgggatgaccaacctcgagcgtcgtcagatcctg
actgaagagcagtatctggacgcgctggaagagttcggtgacgagttcgacgcgaagatg
ggtgcggaagctattcaggccctgctgaaaagcatggatctggagcaagagtgtgaaact
ctgcgtgaagagctgaacgaaaccaactctgaaaccaagcgtaaaaagctgaccaagcgt
atcaagctgctggaagcgttcgttcagtctggtaacaagccagagtggatgatcctgacc
gttctgccggttctgccgccagacctgcgtccgctggttccgctggatggtggtcgtttc
gcgacttcagatctgaacgatctgtaccgtcgtgttatcaaccgtaacaaccgtctgaag
cgtctgctggatctggctgcgccagatatcatcgtacgcaacgaaaaacgtatgctgcag
gaagcggtagatgccttgctggacaacggccgtcgcggtcgtgccatcaccggctctaac
aaacgtcctctgaaatctttggccgatatgatcaaaggtaagcagggtcgtttccgtcag
aacctgctgggtaaacgtgttgactactccggtcgttctgtaatcaccgtaggtccatac
ctgcgtctgcatcagtgcggtctgcctaagaaaatggcgctggagctgttcaaaccgttt
atctacggcaagctggaactgcgtggtctcgcgaccaccatcaaagctgctaagaaaatg
gttgagcgcgaagaagctgtcgtttgggatatcctggacgaagttatccgcgaacacccg
gtactgctgaaccgtgcaccaaccctgcaccgtttgggtatccaggcatttgaacctgtt
ctgatcgaaggtaaagctatccagctgcacccgctggtttgtgcggcatataacgccgac
ttcgatggtgaccagatggcagtacacgttccgctgacgcttgaagctcagctggaagcg
cgtgcgctgatgatgtctaccaacaacatcctgtcaccagcgaacggcgagccaatcatc
gttccttctcaggacgttgtattgggtctgtactacatgacccgtgactgtgttaacgcc
aaaggcgaaggcatggtgctgactggcccgaaagaagctgagcgtatttatcgcgctggc
ctggcctctctgcatgcgcgcgttaaagtgcgtatcaccgaatacgaaaaagatgctcag
ggcacattcgttgcgaaaaccagccttatcgacaccaccgttggtcgtgcgattctctgg
atgatcgtgccgaaaggcctgcctttctccatcgtcaaccaggcgctgggtaaaaaggca
atctctaagatgctgaacacctgttaccgtattctgggcctgaaaccgaccgttattttt
gcggaccagacgatgtacaccggctttgcttatgcagcgcgttcaggtgcatccgttggt
attgatgacatggtcatcccggagaaaaaatacgaaatcatcagcgaagcagaagctgaa
gttgctgagattcaggaacagttccagtccggtctggttaccgctggcgaacgttacaac
aaagttatcgatatttgggcagcagcgaacgaccgcgtatccaaggcgatgatggacaac
ctgcaaactgaaaccgttattaaccgtaatggcgaagaagagcagcaggtttccttcaac
agcatctatatgatggccgactccggtgctcgtggttccgcggcgcagattcgtcagctg
gctggtatgcgtggtctgatggctaagccagatggctccatcatcgaaacgccaatcacc
gcgaacttccgtgaaggtctgaacgtactccagtacttcatctctactcacggtgctcgt
aaaggtctggcggataccgcactgaaaacggctaactccggttacctgactcgtcgtctg
gtagacgttgcgcaggacctggttgttaccgaagacgactgtggcaccctggaaggcatc
acgatgactccggttatcgaaggtggcgacgttaaagaacctctgcgtgaccgcgttctg
ggtcgtgtaacggcagaagacattctgaagccgggtactgcggatattctggttccacgc
aacactctgctgcacgagcagtggtgtgacctgctggaagctaactctgttgacagcgta
aaagttcgttccgtagtaggttgcgaaactgactttggcgtatgtgcgcactgctatggt
cgtgacctggctcgtggccacatcatcaacaaaggtgaagctatcggggttatcgcggca
cagtccatcggtgaacctggtacacagctgacgatgcgtacgttccacatcggtggtgcg
gcatctcgttctgctgctgagtccagcattcaggttaagaacaaaggtagcatcaagctc
agcaatgcgaagtcggttgttaactctaccggcaagctggttgtgacttctcgtaacacc
gagctgaagctgatcgacgaattcggtcgtaccaaagagagctataaagtgccttacggt
gctgttatggccaagggtgatggcgagcaggttgctggcggtgaaaccgttgcaaactgg
gatccacacaccatgccggttatctccgaagtcagtggtttcatccgctttactgacatg
attgacggccagaccattacccgtcagaccgatgaattaaccggcctgtcatccctggtt
gttctggattctgcagaacgtaccgcgggcggtaaagacctgcgtccggcgctgaaaatt
gttgatgcacagggcaacgacgttctgatcccaggcaccgatatgcctgctcagtacttc
ctgccgggcaaagcaattgtacagctggaagatgggatccagatcagtgcgggtgacgcg
ctggcacgtattcctcaggaatccagcggtaccaaggatatcaccggtggtctgccgcgc
gttgctgacctgttcgaagcgcgtcgtccgaaagagcctgctatcctggctgaaatcagc
ggtatcatttcgtttggtaaagaaactaaaggcaaacgccgtctggttatctccccaatc
gacggcagcgatgcttacgaagagatgattccgaaatggcgtcagctgaacgtgttcgaa
ggtgaacgcgtagaacgtggtgacgtggtttccgatggtccagagtctccgcacgacatt
ctgcgtctgcgtggcgtgtatgctgtaactcgttacatcaccaacgaagtgcaggacgtt
taccgtctgcaaggcgttaagattaacgataaacacatcgaagtcatcgtgcgtcagatg
ctgcgtaaagcaaccatcgttaacgccggcagctccgacttcctggaaggcgagcaggct
gaatactctcgcatcaagatcgctaaccgcgaaattgaagcgaacggtaagatcaacgtg
acctttgcacgcgatctgctgggtatcaccaaagcctctctggcaaccgagtccttcatc
tccgcggcatcgttccaggagactactcgagtgctgaccgaagcagccgttgcgggtaaa
cgtgacgaactgcgcggcctgaaagagaacgttatcgtgggtcgtctgatcccggccggt
accggttatgcgtaccaccaggatcgtatgcgccgtcgcgcagcgggtgaagttcctgct
gcaccgcaggtcactgctgaagatgcaactgccagcctggcagagctgctgaacgcagga
aacctcggcggtaacgacgagtaa
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integrated database retrieval system
