Clostridioides difficile CD196: CD196_0113
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Entry
CD196_0113 CDS
T00997
Symbol
truA1
Name
(GenBank) tRNA pseudouridine synthase 1
KO
K06173
tRNA pseudouridine38-40 synthase [EC:
5.4.99.12
]
Organism
cdc
Clostridioides difficile CD196
Brite
KEGG Orthology (KO) [BR:
cdc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
cdc03016
]
CD196_0113 (truA1)
Enzymes [BR:
cdc01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.12 tRNA pseudouridine38-40 synthase
CD196_0113 (truA1)
Transfer RNA biogenesis [BR:
cdc03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
CD196_0113 (truA1)
Prokaryotic type
CD196_0113 (truA1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PseudoU_synth_1
DUF2344
Motif
Other DBs
NCBI-ProteinID:
CBA60248
UniProt:
A0A0H3MYZ8
LinkDB
All DBs
Position
124802..125533
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AA seq
243 aa
AA seq
DB search
MRNIKIKIQYNGKNYCGWQKQPDSLGIQGTIERAIYDITKEETSLIGSGRTDSGVHAIGQ
IANFKINSGISIESIPMALNAKLPKDISVIEACEVNDDFHSRYSAKGKTYKYLVYNSKFR
NPILSEISYQVKYELDFDKMCSEAKSLLGTHDFKGFMSSGSSVKDTVRTIYDIDISKKDD
LITFEISGNGFLYNMVRIIVGTLVDMGRGRINEPFLDIIQSKTRSRCGHTAPAQGLFLKK
VHY
NT seq
732 nt
NT seq
+upstream
nt +downstream
nt
atgagaaatataaaaattaaaatccaatacaatggtaagaattattgtggatggcaaaag
caacctgattctttagggatacaaggtacaattgaaagggctatatatgatataacaaaa
gaagaaaccagtcttatagggtctggtagaactgattcaggagttcatgctattggtcag
attgcaaattttaaaattaattcaggtataagtatagaaagtataccaatggcactaaat
gccaagttgccaaaagacatatcagttatagaagcatgtgaagtaaatgatgattttcac
tccagatacagtgcaaaaggtaaaacatataaatatttagtatataatagcaagtttaga
aatccaatacttagtgagatatcatatcaagtaaaatatgaacttgattttgataaaatg
tgttcagaagcaaaaagtttattaggaacacatgattttaaaggttttatgagttctggt
tcatctgtaaaagatacagttagaacgatatatgatattgatataagtaaaaaagatgac
ttgattacttttgagattagtggtaatggttttttatataacatggtgaggattattgtt
ggaacacttgttgatatgggtcgtggcagaattaacgaaccatttttagatataatacaa
tcaaaaactaggtcaagatgtggacatacagctccagcacaaggattatttctcaaaaaa
gttcattattaa
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