Clostridioides difficile CD196: CD196_0501
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Entry
CD196_0501 CDS
T00997
Symbol
nfo
Name
(GenBank) endonuclease IV
KO
K01151
deoxyribonuclease IV [EC:
3.1.21.2
]
Organism
cdc
Clostridioides difficile CD196
Pathway
cdc03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
cdc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
CD196_0501 (nfo)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cdc03400
]
CD196_0501 (nfo)
Enzymes [BR:
cdc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.21 Endodeoxyribonucleases producing 5'-phosphomonoesters
3.1.21.2 deoxyribonuclease IV
CD196_0501 (nfo)
DNA repair and recombination proteins [BR:
cdc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
CD196_0501 (nfo)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AP_endonuc_2
DUF2124
Ala_racemase_N
Motif
Other DBs
NCBI-ProteinID:
CBA60974
UniProt:
A0A0H3N418
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All DBs
Position
586436..587272
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AA seq
278 aa
AA seq
DB search
MIKLGTHLSIAKGFANAAETAVYIGANTFQFFSRNPRGGNAKEFDEKDIIKFQEIRKENN
FAPLLAHAPYTMNLGGTKDDVYEFATRVIDEDIRRMDSLGIEYMCFHPGSHIGGGVDFGI
DRIVKGLNNAIKGDENITILLETMSGKGTEIGFKFEQLKSIIDKIEHKEKIGVCLDTCHI
FSAGYDIVNDLDGVLEEFDKVIGIERLKTVHLNDSMMPFGDKKDRHAPIGEGKIGLKALI
DFMEHPSLKHLPFFLETPFDDEGHKRELKMIKEILSSK
NT seq
837 nt
NT seq
+upstream
nt +downstream
nt
atgattaaattaggaacacatctttcaatagcaaaaggatttgctaatgcggctgagaca
gctgtatatattggtgcaaatacatttcaattttttagtagaaatccaagaggaggaaat
gctaaagaatttgatgaaaaagatataattaaatttcaagaaattagaaaagaaaataat
tttgcaccactgcttgcacatgcaccatatactatgaatctgggtggtacaaaggatgat
gtatacgaatttgcaacaagggtgatagatgaggatataagaaggatggactcattagga
attgaatacatgtgttttcatcctggaagtcatataggtggtggtgtagattttggtata
gatagaatagtaaaaggattgaacaatgccataaagggtgatgaaaatataactatactt
cttgaaactatgtcgggaaagggaactgaaataggttttaaatttgagcaattaaaaagt
ataatagacaaaattgagcataaagaaaaaataggtgtgtgtcttgatacatgtcatatt
ttttcagccggttatgatatagtgaatgatttagatggggttttggaagaatttgataag
gttataggcatagaaagattgaaaactgtccatctaaatgatagtatgatgccatttgga
gacaaaaaagacagacatgctcctataggggaaggaaagataggattaaaagcattaatt
gattttatggaacatcctagtctaaaacatttaccatttttcttagaaactccttttgat
gatgaaggtcacaagagagagcttaaaatgataaaagaaatactatctagtaaataa
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