Clostridioides difficile CD196: CD196_0708
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Entry
CD196_0708 CDS
T00997
Name
(GenBank) putative ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
cdc
Clostridioides difficile CD196
Pathway
cdc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cdc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CD196_0708
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cdc03019
]
CD196_0708
03009 Ribosome biogenesis [BR:
cdc03009
]
CD196_0708
Enzymes [BR:
cdc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CD196_0708
Messenger RNA biogenesis [BR:
cdc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CD196_0708
Ribosome biogenesis [BR:
cdc03009
]
Prokaryotic type
rRNA helicases
CD196_0708
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_30
Cas3-like_C_2
Card1_endonuc
Motif
Other DBs
NCBI-ProteinID:
CBA61352
UniProt:
A0A0H3N0P8
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All DBs
Position
859023..860636
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AA seq
537 aa
AA seq
DB search
MNITKFEDLPISEGIKKAIAEMGFEEPSPIQAQSIPAILSGKDVIGQAQTGTGKTAAFSI
PILETIDPNNRSLQAVVLCPTRELAIQVSTEIRKLAKYSHGIKTLPIYGGQPIDRQIKSL
KSGVQVVIGTPGRTIDHINRKTLKMDNVKMIILDEADEMLDMGFREDIEMILSKIPEERQ
TTFFSATMPRGILELTKRYQKDPEHIKVVRKELTVSNTKQYYIETRSSNKLEVLCRLVDV
YDPKLSVVFCNTKRKADELVGDLQARGYFADALHGDLKQTQRDIVMDKFRNGTIDILVAT
DVAARGIDVDDVECVFNYDLPQDEEYYVHRIGRTGRAGREGMSFTFVFGKEMRKMKDIER
YTKSKLIKHNIPTITDVEEKKVGTFFAQVKQTIEEGHLTKQLQWLEGFCNDEDYAMVDIA
AALVKLSLGEEMKEEIIEEKPRRERGDRKGGTGAKDGMIRLFINIGRNQRVQAKDIVGAI
AGEVGIPGKVVGTIDIYDKYTFVEIPKKDAKTVIEKMKDIKIKGNKINIEKANKKKK
NT seq
1614 nt
NT seq
+upstream
nt +downstream
nt
atgaatataacaaagtttgaagatttaccaataagtgagggaataaaaaaagctatagct
gaaatggggtttgaagaaccatctcctatacaagcacagtctatacctgcgattttgtca
ggtaaagacgttataggacaagctcaaactggtacgggaaaaacagctgcttttagtatc
cctatactagaaacaatagacccaaataatagaagtttacaagctgtagtgctttgtcca
acaagagaactggcaatacaagtatcaacagaaataagaaagttagctaagtattcgcac
ggaataaagacattacctatatatggtggccagccaatagatagacaaataaaatctcta
aagagtggtgtgcaagttgtaataggtacaccaggacgtacaatagaccatatcaatcgt
aaaacattaaagatggataatgtaaaaatgattatattagatgaagcagatgaaatgcta
gatatgggatttagagaagatatagaaatgattttaagtaagattccagaagaaagacaa
acaactttcttttcagctactatgccaagaggaattttggaattaactaagagatatcaa
aaagacccagagcatataaaagttgttagaaaagaacttacagtttcaaatacaaagcaa
tactatatagaaactaggtcatcaaataaattagaagtattatgtagattagtagatgta
tatgaccctaaactatctgttgttttctgtaatactaagagaaaagcagatgaattggta
ggagatttacaagcaagaggatattttgcagatgcattacatggtgacttaaaacagact
caaagagatatagtaatggataagtttagaaatggtacaatagatatacttgttgctact
gatgttgcagctagaggtatagatgttgatgatgttgaatgtgtattcaactatgactta
ccacaagatgaagagtattacgttcatagaattggtagaactggtcgtgctggtagagaa
ggtatgtcatttacttttgtatttggaaaagaaatgagaaagatgaaagatatagaaaga
tatactaaatctaaactaataaagcataatataccaacaataactgatgttgaagagaaa
aaagtaggtactttctttgcacaagttaaacaaactatagaagaaggtcacttaactaaa
caattacaatggttagaaggtttctgtaatgatgaagattatgcaatggttgatatagct
gctgcacttgtaaaactatctctaggtgaagaaatgaaagaagaaataatagaagaaaaa
cctagaagagagcgtggagatagaaaaggtggtactggagctaaagatggtatgattaga
ttatttatcaatattggtagaaatcaaagagtacaagcaaaagatatagttggtgctata
gctggagaagttggaataccaggtaaagtagtaggtactatagatatatatgataagtat
acttttgttgaaatacctaaaaaagatgcaaaaacagtaattgaaaagatgaaagatatt
aagataaaaggtaataagattaatatagaaaaagcaaataagaagaaaaaataa
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