Clostridioides difficile CD196: CD196_0780
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Entry
CD196_0780 CDS
T00997
Name
(GenBank) putative ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
cdc
Clostridioides difficile CD196
Pathway
cdc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cdc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CD196_0780
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cdc03019
]
CD196_0780
03009 Ribosome biogenesis [BR:
cdc03009
]
CD196_0780
Enzymes [BR:
cdc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CD196_0780
Messenger RNA biogenesis [BR:
cdc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CD196_0780
Ribosome biogenesis [BR:
cdc03009
]
Prokaryotic type
rRNA helicases
CD196_0780
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
CBA61492
UniProt:
A0A0H3N4T3
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All DBs
Position
complement(934253..935380)
Genome browser
AA seq
375 aa
AA seq
DB search
MKGKITMDFKSLGISENTINILKKSGITTPTPIQKESIKLIKEGKDVIAEAQTGTGKTLA
FLLPIFENISLDINDIQVLILSPTRELAIQITEEAMKLKESKDVSILAAYGGKDIGSQIK
KLKGNIHMIIATPGRLLDHLNRKTIDLSKLKTFVLDEADQMLLMGFKNEVEAILKETSNK
KQTLCFSATINSQVKKLAYRYTKNPVVVSIQKEEITLNNIKQEVVETTDRKKLDALCKVL
DEDNPFMAIIFCRTKRRVDNLEEALAIRGYNCQKLHSDIAQSKRERIMKSFRNLDIQYLI
ATDVASRGLDISGVSHIYNYDLPETPEDYIHRIGRTGRAGEEGYTCAFIDPKNERMLSEI
ETAIESKISRRIIEL
NT seq
1128 nt
NT seq
+upstream
nt +downstream
nt
atgaaaggtaagataacaatggatttcaaaagcttagggattagtgaaaatacaataaat
attctaaaaaaatcaggaataacaacacctacacctatacaaaaagaaagtattaaacta
ataaaagaaggaaaagatgtaatagcagaagctcaaactggaacaggaaaaacactagct
tttttacttccgatatttgaaaatatatcattagatataaatgatatacaagtacttata
ctttctcctacaagagaactagctattcaaataacagaagaagctatgaaacttaaagaa
tctaaagatgtaagtattcttgcagcatatggaggaaaagatattggttctcaaataaag
aaactaaaaggaaatattcatatgattatagctacaccaggtaggcttttagaccatcta
aatagaaaaacaatagaccttagtaagttaaagacttttgttttagatgaagcagaccaa
atgttgcttatgggatttaaaaacgaagtggaagctattttaaaagagacttcaaacaaa
aagcaaacactatgcttttctgcaactataaattctcaagtaaaaaaattagcttataga
tacacaaaaaatcctgttgtagtttctattcaaaaagaagaaatcactcttaataatata
aaacaagaagtagtagaaactacagatagaaaaaaattagatgccttatgtaaggtacta
gatgaagataatccttttatggcaataatattttgtaggactaagagaagggttgacaat
cttgaagaagctcttgctataagaggatataattgtcaaaaacttcatagtgatattgct
caatcaaaacgagaaagaataatgaaatcatttagaaatttagatatacaatacttaata
gctacagatgtagcttctcgtggccttgatatatctggagtaagtcatatatataattac
gatttaccagaaacaccagaagactacatccaccgtattggtagaactggtagagctggt
gaagaaggctatacatgtgcttttattgaccctaaaaatgaacgaatgttaagtgaaata
gagacggctatagaatctaaaattagtagaagaattatagaattataa
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