Clostridioides difficile CD196: CD196_1192
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Entry
CD196_1192 CDS
T00997
Name
(GenBank) putative nucleic acid-binding protein
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
cdc
Clostridioides difficile CD196
Pathway
cdc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cdc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CD196_1192
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cdc03019
]
CD196_1192
Messenger RNA biogenesis [BR:
cdc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CD196_1192
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KH_KhpA-B
Motif
Other DBs
NCBI-ProteinID:
CBA62264
UniProt:
A0A0H3NAK7
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All DBs
Position
1399572..1401113
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AA seq
513 aa
AA seq
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MDVIDSVVMIVIGAAVGIIAGYFVRKNISEAKIGQAENLAKEIIDKAHHDSETVQKEKLL
EAKEEIHKWRTEAERENRERRTEVQKYEKRVVQKEEVLDRKLQNLESKEVNLSEKLKVVE
KKEEEVEVIKTQQLEKLESISGITSDKAKEIILTNAERDVRREMSIMIKEIESQAKEEAD
KKSREIIGYAIQKCAADHVAETTVTVVSLPNDEMKGRIIGREGRNIRTLETLTGIDLIID
DTPEAVILSGFDPIRREIARIALEKLIADGRIHPARIEEMVEKARKEVDNIIKEYGEQAA
FETSVHGIHPELIRLLGRLNYRTSYGQNVLKHSIEVAHIAGIMAAEIGADIRLAKRAGLL
HDIGKAVDHEMEGTHVEIGMDLLRRYKESKEVIHAMSTHHGDYEPQTVEAVLVTAADAIS
AARPGARRETLEAYIKRLEKLEEIANSYEGVEKSFAIQAGREIRIMVKPEAINDEEIHLL
ARDMTKKIEDELEYPGQIKVSIIRETRAIEYAK
NT seq
1542 nt
NT seq
+upstream
nt +downstream
nt
gtggatgtcatagatagtgtagtaatgattgtaataggtgcagctgttggtattatagct
ggatattttgttagaaaaaatatatctgaagcaaaaattggacaagctgaaaacttggcc
aaagaaataatagataaagcacaccacgactcagaaacagtacaaaaagaaaaattacta
gaagctaaagaagagatccataagtggagaacagaagctgaaagagaaaacagagaaaga
agaacagaagtacaaaagtatgaaaaaagagtagtacaaaaagaagaagtcttagataga
aaattacaaaatttagaatctaaagaagtaaacctaagtgaaaaattaaaggtagtggaa
aagaaagaagaagaagtcgaagtaataaaaactcaacagttagaaaaattagaaagtata
tcaggaattacttctgataaggccaaagaaatcatcttaaccaatgcggagagagatgta
agacgtgaaatgtctataatgataaaagagatagaaagtcaagctaaagaagaagctgat
aagaaatcaagagaaattataggatatgcaattcaaaaatgtgcagcagatcacgtagcc
gaaactactgtaacagtagtaagcttgcctaatgatgaaatgaaaggtagaataataggt
agggaaggtagaaatataaggactttagaaaccttaacaggtatagaccttataatagat
gacactccagaagccgtaattttatcaggatttgatccaataagaagagaaattgcaaga
attgctctagaaaaattaatagcagatggaagaatacatccagctagaattgaagaaatg
gttgaaaaggcgagaaaagaagttgacaatattataaaagaatatggtgaacaagctgca
tttgaaactagtgtacatgggattcatccggaattaataagattattaggtagacttaac
tatagaactagttatggacaaaatgtacttaaacattctatagaagttgctcatatagct
ggtataatggctgctgaaataggagcagatattagattggctaagagggcaggtttatta
catgatataggtaaggctgtagaccatgaaatggaaggtacacatgttgaaataggtatg
gatttacttagacgttataaagagtctaaagaagttatacatgccatgagtactcatcat
ggagattacgaacctcaaacagtagaggctgtattagttacagcagcagatgcaatatca
gctgctagacctggtgcgagaagagaaactttagaagcatatataaagagacttgaaaaa
ttagaagaaatagctaattcatatgaaggtgtagaaaaatcatttgctatacaagctggt
agagaaataagaataatggtaaaaccagaagctataaatgatgaagaaatacatctattg
gctagagatatgactaagaaaatagaggatgaacttgaatatcctggacaaataaaagta
agcataataagagaaacaagagctatagagtatgcgaagtaa
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