Clostridioides difficile CD196: CD196_1624
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Entry
CD196_1624 CDS
T00997
Symbol
recQ
Name
(GenBank) ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
cdc
Clostridioides difficile CD196
Pathway
cdc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cdc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CD196_1624 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cdc03019
]
CD196_1624 (recQ)
03400 DNA repair and recombination proteins [BR:
cdc03400
]
CD196_1624 (recQ)
Enzymes [BR:
cdc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CD196_1624 (recQ)
Messenger RNA biogenesis [BR:
cdc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CD196_1624 (recQ)
DNA repair and recombination proteins [BR:
cdc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
CD196_1624 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HRDC
DEAD
Helicase_C
RQC
HTH_40
RecQ_Zn_bind
ResIII
Helicase_Sgs1
HTH_29
FtsH_ext
Motif
Other DBs
NCBI-ProteinID:
CBA63113
UniProt:
A0A0H3N2J1
LinkDB
All DBs
Position
1887967..1890450
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AA seq
827 aa
AA seq
DB search
MNKKLLEILSKYYGYTSFRKGQESIINSILSEKDVLAIMPTGGGKSICYQIPALILDGMT
IVISPLISLMKDQVDALKTMGISAAFINSSLSSKEFNEILNNIRKNNYKILYIAPERLDA
QEFIELINNNNVSQVAIDEAHCVSQWGHDFRLSYRRISDFIKNLPKRPIVTAFTATASEE
VRTDIINLLCLENPDYYITGFDRENLSINIVKSSSKNKYILDYIQNHKNESGIIYVATRK
EVENIYNGLSKRNISVSKYHAGLSKNERSKNQEDFINDNVDIMVATNAFGMGIDKPNIRW
VIHYNMPQSIENYYQEIGRAGRDGEKSECVLLFSPGDVHIQKYLIDIGVENPERKLFQHK
KLQYMIDLVYSNSCYRKTILSYFGENYIDNCNNCSNCLVEGEIVDKTIDAQKVISCVARM
KRSYGVTTIVDVLRGSKNKKILQLGLNTLSTYNIMRDYSSEDLKNFVNTLVSHGFLDLVE
TLGNGNRGSFPTIRLNEMSMKVLKGEVKVEFKEIVMTKSLEVEDELYNALRELRHSIASE
ERIAPYMVFGDGTLRAMSSSYPINKEEMLDISGVGEIKYQKYGRDFEAVIKEYVEKNNIN
KKIDEKNVDLKNVNSDFLEVNTDKVLYEKLLVIREEYATKEKLPAYMILANKALKEISGR
YPLDEEQLKDISGIGGVKFEKYGANILAEVNKYVKENNINVIWEKKGKRKLILDGESRKN
NEIALDLLNQGKDIQSISQEIEVSLSTIIGYVHDYVKDGHSISFELGLENFYNEDKKKMI
LEVCEKVGYDNLNNIKRKLPDSIKYENIRAVMLDSYLENLKNNIIAE
NT seq
2484 nt
NT seq
+upstream
nt +downstream
nt
atgaataaaaaacttttagaaatactatcaaaatactatggatatacaagttttagaaaa
ggtcaggaatctataataaattctatcttaagcgaaaaagatgtgttagctattatgcca
acaggaggggggaaatcaatatgttatcaaattccagctttgattttagatggaatgaca
atagtaatttctccacttatatcacttatgaaagaccaagtagatgccttaaagactatg
ggaattagtgctgcttttataaatagttcattaagcagcaaagaatttaatgaaatatta
aataatattagaaaaaataattataaaatactctatattgctccagagagattagatgca
caagagtttattgagctaataaataataacaatgtaagtcaagttgcgatagatgaagca
cattgtgtatctcaatgggggcatgattttaggttgagttatagaaggatttctgatttt
ataaaaaatttgcctaaaagacctatagttacagcatttactgcaacagcttcagaagag
gtaagaactgatataataaatttactgtgtttagaaaatccagattattatataactgga
tttgatagagagaatttatcaataaatatagtaaaatcatctagtaaaaataagtatatt
ttagattatattcaaaatcataaaaatgagtctggaattatatatgttgcaactagaaag
gaagttgaaaatatatataatggtttatctaagagaaatatatctgtatcaaaatatcat
gcaggtttatctaaaaatgaaagaagtaaaaatcaagaagattttataaatgataatgtg
gatataatggtagcaacaaatgcatttggaatgggtattgataaacctaatataagatgg
gttatacattacaatatgcctcaaagtatagaaaactactatcaagaaataggtagagct
ggtagggatggagaaaaaagtgagtgtgtacttttattttctccaggagatgtacatata
caaaaatatttaattgatattggagttgaaaatcctgaaagaaaattatttcagcataag
aagcttcaatacatgattgacttagtttacagtaattcatgctatagaaagacaatattg
agttattttggagaaaattatatagacaattgcaataattgtagcaattgtttagtagag
ggtgaaatagtagataaaactatagatgcacaaaaagtcatttcatgtgtagctagaatg
aaaagaagttatggtgttactactattgtagatgtacttagaggttctaagaataaaaag
attttacagcttggattaaatactttgtctacatataacattatgagagattattctagt
gaagacttaaagaattttgtaaatacattggtttctcatggttttttagatttagttgag
actctaggcaatggaaatagaggtagttttcctactataagattaaatgagatgtctatg
aaagttttaaaaggtgaagtgaaagtagagtttaaagaaattgttatgacaaaatcattg
gaagtagaggatgagttatataatgctttaagagaacttagacattcaattgcaagtgaa
gaaaggatagctccatatatggtatttggagatggtacacttagagccatgtctagtagt
tatccaattaataaagaagaaatgctagatatctctggagtaggagaaattaaatatcaa
aaatatggtagagattttgaagcagtaattaaagaatatgtcgaaaaaaataatataaat
aaaaaaatagatgaaaaaaatgtcgatttaaagaacgttaatagtgatttcttagaggtt
aatacagataaagttttatatgaaaaactgttagtcattagagaagaatatgcaacaaag
gaaaaattacctgcatatatgattttagccaataaggctttgaaagaaataagtggaaga
tatccacttgatgaagaacaattaaaagatatttctggcataggtggagtaaaatttgaa
aaatatggagctaatattttggcagaggttaataaatatgtaaaagaaaataatattaat
gttatttgggagaaaaagggcaaaaggaagttaatattagatggagaaagtagaaaaaat
aatgaaatagcattagatttgctaaatcaaggaaaagatatacaaagtatcagtcaagaa
atagaagtttcattgtcaaccattattggatatgtgcatgactatgtaaaggatggacat
agtatatcatttgaattaggactagaaaatttttataatgaagataaaaagaagatgatt
ttagaagtttgcgaaaaagttggctatgataatttaaataacataaaaagaaaacttcca
gattcaataaagtatgaaaatataagagctgtgatgcttgactcttatcttgaaaactta
aaaaataatattatagcagagtaa
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