KEGG   Clostridioides difficile CD196: CD196_1854
Entry
CD196_1854        CDS       T00997                                 
Symbol
hfQ
Name
(GenBank) HfQ protein
  KO
K03666  host factor-I protein
Organism
cdc  Clostridioides difficile CD196
Pathway
cdc02024  Quorum sensing
cdc03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:cdc00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    CD196_1854 (hfQ)
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    CD196_1854 (hfQ)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cdc03019]
    CD196_1854 (hfQ)
   03036 Chromosome and associated proteins [BR:cdc03036]
    CD196_1854 (hfQ)
Messenger RNA biogenesis [BR:cdc03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     CD196_1854 (hfQ)
Chromosome and associated proteins [BR:cdc03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    CD196_1854 (hfQ)
SSDB
Motif
Pfam: Hfq Hfq_1 LSM GON
Other DBs
NCBI-ProteinID: CBA63543
UniProt: A0A0H3N7W1
LinkDB
Position
complement(2134004..2134264)
AA seq 86 aa
MKNTVLNLQDLFLNNARKERIPVTIYLVNGVQVKGLVKGFDSYIILIEGDNRQQNMIYKH
AVSTIQPGKYINLTNQNQNNNNNNNR
NT seq 261 nt   +upstreamnt  +downstreamnt
atgaaaaatacagttttaaatttacaagatttgtttttaaataatgcaaggaaagaaagg
atacctgttactatatatttagttaatggagtgcaagttaaagggcttgtaaaggggttt
gatagttatataatattaatagaaggggataatagacaacaaaacatgatttataaacat
gctgtatcaactatacaacctggaaagtatattaatctaacaaatcaaaaccaaaacaac
aataataataacaacagatag

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