Clostridioides difficile CD196: CD196_2497
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Entry
CD196_2497 CDS
T00997
Symbol
spoVD
Name
(GenBank) stage V sporulation protein D (sporulation specific penicillin-binding protein)
KO
K08384
stage V sporulation protein D (sporulation-specific penicillin-binding protein)
Organism
cdc
Clostridioides difficile CD196
Pathway
cdc00550
Peptidoglycan biosynthesis
cdc01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
cdc00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
CD196_2497 (spoVD)
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
cdc01011
]
CD196_2497 (spoVD)
Peptidoglycan biosynthesis and degradation proteins [BR:
cdc01011
]
Peptidoglycan biosynthesis and degradation
DD-Transpeptidase (Class B PBP)
CD196_2497 (spoVD)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Transpeptidase
PBP_dimer
PASTA
BBS2_N
Motif
Other DBs
NCBI-ProteinID:
CBA64788
UniProt:
A0A0H3N4T5
LinkDB
All DBs
Position
complement(2899675..2901654)
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AA seq
659 aa
AA seq
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MRKVKRISKKRLVLVLILACALFFCLVIRTGYLQLMKGNWLSTKALEQQTRDIPIEPKRG
TIYDRNMKELAVSVTKYTVWCKPVEVEDKKEAAEKVAEILDEDYKDIYALISKKNMALVK
VKRWIDDDKASQIRDAKLSGIWVAEDNQRYYPYGNFAPYVLGHTSSDATGISGVEMQYDK
KLKGKPGKLIVSTDASGREIPQGMEKYYEPVQGNGLVLSIDEVIQHYTEKAVQKAYELNN
AKKVTAIAMNPKTGDILALASKPDYDPNDSRTPIYPYYQEELEKYNDKDKIKGYYQMWRN
PAVSDTYEPGSTFKLITSSSALEEGVIKDGEKFTCTGSVTVGGRKIKCWRHYRPHGTQEF
KQAVQNSCNPVFVELGSRLGVGKMYDYIESFGLMDKTGIDLPGEAKGILYNEKNVGPVEL
ATISFGQSISVTPIQLITAISSIANGGDLMQPRVVKSYTDNKGNITETVKPKKVRSVISK
ETSKKMLEIAESVVTEGGGKIAYIPGYRLGGKTGTAQKVIDGKYAPGKYICSFVGIAPCD
DPQIVVLAIVDEPTGVSAFGSTTAGPIVKEIMNDSLKYLGVKPVYKEEEKAEYEKKQVKV
PDVRNLKIGDAVKALEDAKLKPDLDADIELPEDTKVKDIFPKPGVKVNEDSSITLYFEN
NT seq
1980 nt
NT seq
+upstream
nt +downstream
nt
ttgagaaaagtaaagaggataagtaagaaaaggctggtactcgttcttattctagcatgt
gcattgtttttttgccttgttattaggactgggtacctacaacttatgaagggaaattgg
ttgagtacaaaagcactagaacaacaaacaagagatataccaatagaacccaaaagagga
actatatatgatagaaatatgaaagaattagcagtaagtgtaactaagtatactgtttgg
tgtaaacctgtggaagtagaagataaaaaagaagcagctgaaaaggtagctgagattttg
gatgaagattataaagatatttacgctttaataagcaaaaaaaatatggctcttgtaaaa
gtaaaaagatggatagatgatgataaggcaagtcaaataagagatgctaaattaagtgga
atatgggtagcagaagataatcaaagatattacccatatgggaattttgcgccatatgtg
ttaggacatacttcttcagatgcaacaggtatatctggtgtagaaatgcaatatgataaa
aagttaaaaggaaagcctggaaaacttatagtaagtactgatgcctcaggaagagaaata
ccacaaggaatggaaaaatattatgagcctgtacaaggtaatggtcttgtgttgtctata
gatgaagtaattcaacactatactgaaaaagcagtacagaaagcttatgagttaaataat
gcaaaaaaggttactgcaatagctatgaaccctaaaacaggtgatatacttgctttagca
tcaaaaccagattatgaccctaatgactcaagaacgccaatatatccatattatcaagaa
gaacttgaaaaatataatgataaagataaaataaaaggctattatcaaatgtggagaaat
ccagcagtaagtgatacatatgaaccaggttctacatttaagcttattacatcttccagt
gctcttgaagagggagtaattaaagatggagaaaaattcacatgtacaggtagtgtaact
gttggaggaagaaagattaaatgttggagacattacagacctcatggaacacaagaattt
aaacaagcagtacaaaactcttgcaacccagtatttgttgaattaggaagcagattaggt
gttggaaaaatgtatgattatatagaatcatttggccttatggataagacaggtatagat
ttaccaggagaagctaagggaatactgtataacgaaaaaaatgtaggaccagttgaattg
gctacaatatcatttggtcaatctatatcagtaactccaatacaacttataacagctata
tcatcaatagctaatggtggagatttaatgcaaccaagagtggtaaaatcttatactgac
aataaaggaaatataactgaaacagtaaaaccaaaaaaagtaagaagtgttatatctaaa
gaaacatctaaaaaaatgttagaaattgcagaatcagttgtaactgaaggtggaggaaag
atagcatatataccagggtatagacttggtggtaaaacaggtacagctcaaaaagttata
gatggtaagtatgctccaggaaagtatatatgttcatttgttggaatagcaccttgtgat
gacccgcaaatagtagttcttgctattgttgacgaaccaacaggagtaagtgcatttggt
agtactacagcaggaccaatagtgaaagaaataatgaatgactctttaaaatatttggga
gttaaaccagtatataaagaagaagaaaaagctgagtatgaaaagaagcaagttaaagtg
ccagatgtaagaaatctaaaaataggagatgctgtaaaggcattggaggatgcgaagtta
aaaccagacttagatgcagatatagaacttccagaagatacaaaggtaaaggatatattc
ccaaaacctggagtaaaagttaatgaagactcaagtataaccctatattttgaaaactaa
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