Clostridioides difficile CD196: CD196_2588
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Entry
CD196_2588 CDS
T00997
Symbol
recJ
Name
(GenBank) putative single-stranded-DNA-specific exonuclease
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
cdc
Clostridioides difficile CD196
Pathway
cdc03410
Base excision repair
cdc03430
Mismatch repair
cdc03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cdc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
CD196_2588 (recJ)
03430 Mismatch repair
CD196_2588 (recJ)
03440 Homologous recombination
CD196_2588 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cdc03400
]
CD196_2588 (recJ)
DNA repair and recombination proteins [BR:
cdc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
CD196_2588 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
CD196_2588 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CD196_2588 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
LDcluster4
ssDNA-exonuc_C
Motif
Other DBs
NCBI-ProteinID:
CBA64963
UniProt:
A0A0H3N514
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All DBs
Position
complement(3019589..3022039)
Genome browser
AA seq
816 aa
AA seq
DB search
MKKWILKYKGKIEESEFSKKLNISPEICQILKNRGICTEKDSEIFMNPSLDYLRDPFLMK
DMQKAVDRIKLAVEKNEKIWIYGDYDVDGVSSTSILCLYFKSIGYNVDYYIPNRLEEGYG
INEDAIKLISSRGCDLIISVDCGITSVSEVNTANDLGIDVIITDHHECQSEIPSAFAVIN
PKQEDCNYPFDSLCGCGVAFKMIQALTPKEEFKTSMYNYLEIVTLATICDIVPLIDENRI
IVKNGLKSMKEGKNIGLRELIKVCGVESDKIGSSHIGFAIGPRINASGRLGYSYLGVELF
TTQSQEEAVEIASILEEKNNERQMIEAKMYHEAEEMLKSNSRYNDDKVLVLAKEGWQHGI
IGIVASKLTEKYYKPTILLGIENGEATGSARSIKGFNIFEALIKCKDLMTKFGGHEQAAG
LSLDSDNVEILANEINKFADYNLTEDDMIENVNVEFELQENVINLNLVEELHKLEPFGLN
NPNPRFIVRNYILKDLKVIGKNQQHLKLSIEKEKSYECIGFNMSHLKSMYKVGDKVDVLF
QLDENNYMGNRKVQFLLKDIRLARPKSASNDKLSLKLMSKIIPKDTQSLYNISVSDFELF
DGNTDINIFDYFEKDTLIISNSINGFYRAMSDISLIDLDFNINYNIIEDVSKNTDKLELI
FSPNIDKIDLKRYNNIILYDYLYNKGEYSYIYENKREESEIIKYYNKTDLLYLKNVVSNI
VPSRDEFITIYKQALIKKEIDLDMVNIRETFNVIPLKFFTILNVFRELNLLDFNLNYEKN
SVLIRILPKPQKKLDLNESLILNNLKNLEKQYNSSY
NT seq
2451 nt
NT seq
+upstream
nt +downstream
nt
ttgaaaaaatggatattgaagtataaaggtaagatagaggaaagtgaatttagcaaaaaa
cttaatatttccccggaaatctgccaaattttaaaaaatagagggatatgtactgaaaaa
gattcagaaatatttatgaatccatctttagattatttaagagacccttttttaatgaaa
gatatgcaaaaagctgttgatagaataaagttagcagttgagaagaacgaaaaaatttgg
atttacggagattatgatgttgatggtgtatcatctacatccatcttgtgtttatatttt
aagagtataggttacaatgttgattactatattcctaatagattagaagaagggtatggt
ataaatgaggatgctattaagcttataagctctaggggatgtgacttgattataagtgtt
gactgtggaattacatcagtgtctgaggtcaatacagcgaatgatttgggcatagatgtt
ataattacagaccatcatgaatgtcaaagtgaaattccatcagcctttgcagtaataaat
ccaaaacaagaagattgtaattatccatttgattcactatgtggatgtggtgtagcattt
aaaatgattcaagccttgactccaaaagaagaatttaaaactagtatgtataattatttg
gaaatagtaacactagcaactatttgtgatattgttccacttatagatgaaaatagaata
attgtaaaaaatggtttaaaatcaatgaaagaaggcaaaaatattggattaagggagctt
ataaaagtttgtggtgtagaaagtgataagataggttcttctcatataggttttgcaata
ggtcctaggataaatgcttcaggtcgattgggatattcttacttaggagtagagctattt
actactcagtcacaagaagaggcagtagaaatagctagtatattggaagaaaaaaataat
gaaagacagatgatagaagctaagatgtatcatgaagctgaagaaatgctaaagtctaat
agcagatacaatgatgacaaagtgttggttttagccaaagagggttggcaacatggaata
ataggaattgtagcatcaaagttaactgaaaaatactacaaaccaacaattcttctaggt
atagaaaatggggaggctactggttcagcgaggtcaataaaaggatttaatatatttgaa
gctctcataaagtgcaaagacttgatgactaagtttggtggtcatgaacaagcagcaggg
ttatccttggattcagacaatgtagaaattttagcaaatgaaataaataaatttgcagat
tataatttaactgaagatgatatgatagagaatgtaaatgtcgagtttgaattacaagaa
aatgtaataaatttaaatcttgtagaagaattacataagttagaaccctttggattaaat
aatcctaatcctagatttatagttagaaattatattttaaaagatttgaaagttataggt
aagaatcaacaacatctgaaattaagtatagaaaaagagaaaagctatgaatgtatagga
tttaatatgagtcatttaaaatcaatgtataaagtaggagacaaagtagatgtactattc
caattagatgaaaataactatatgggaaataggaaagtacaatttttacttaaagatata
cgattggctcgacctaaaagtgcaagtaatgacaaactttcattgaaattaatgtcaaaa
ataataccaaaagatactcaaagcctgtataatatatctgtgtctgattttgaattattt
gatggaaatacagatataaatatatttgattattttgaaaaagatacactaataatatct
aattctataaatggattttatagagcaatgtcagatatatcacttatagatttggatttt
aacataaattacaatattattgaagatgttagcaaaaatactgataaattagagcttata
ttttctcctaatattgataaaatagacttaaaaagatataataatattattctttatgat
tatttatacaataaaggcgaatattcgtatatatatgagaataaaagagaagaaagtgaa
attataaaatattataataaaacagacctattatatttaaagaatgtagttagtaatata
gttccatcaagagatgaatttataacaatttataaacaagcacttataaaaaaagaaatt
gatttggatatggtaaatataagggaaacttttaatgtaattccattaaagttttttacg
atattaaatgtatttagagaattaaatttacttgactttaatttaaattatgaaaaaaat
tctgtactcataagaatattgccaaaaccacagaaaaaattagacttaaatgagagttta
atactcaataatctaaaaaatttagaaaaacaatacaatagcagttattag
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