Clostridioides difficile CD196: CD196_2971
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Entry
CD196_2971 CDS
T00997
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
cdc
Clostridioides difficile CD196
Pathway
cdc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cdc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CD196_2971 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cdc03019
]
CD196_2971 (rnr)
03016 Transfer RNA biogenesis [BR:
cdc03016
]
CD196_2971 (rnr)
Enzymes [BR:
cdc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
CD196_2971 (rnr)
Messenger RNA biogenesis [BR:
cdc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CD196_2971 (rnr)
Transfer RNA biogenesis [BR:
cdc03016
]
Prokaryotic type
tRNA degradation factors
CD196_2971 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_Dis3
OB_RNR_1st
OB_HELZ2
S1CSD-TOTE-2
CSD
S1_RRP5
Motif
Other DBs
NCBI-ProteinID:
CBA65991
UniProt:
A0A0H3N632
LinkDB
All DBs
Position
complement(3519166..3521301)
Genome browser
AA seq
711 aa
AA seq
DB search
MIPGLKESLLGLINESAYNPLKKEELAEIFDIHSSEMPMFYNFLNELEEDGYICFTKKGK
IVSPNQMGYFVGKFVSHKKGFGFVESDVEYTQDLFISSDNINGAMHNDRVMAEIVVPATE
EKRAEGRIVKVIKREITRIVGTFQSSKTFGFVTPDNKKFTKDIYIPKKHFSGAVDNDKVV
CEITVWPQEDRKPEGKIIEILGQKGERGVEIDSIIREHGLPEEFPKKVLQEAEAVAVEIP
QEEIKRRRDLRDLNIFTIDGDDAKDLDDAISIEVLPNGNFKLGVHIADVTHYVREKNKLD
KEALKRATSVYLVDKVIPMLPKTLSNGVCSLNPFEDKLTLSIFMEIDHKGNVVKHEICES
VINSKARMTYTEVSDILEKDDEKLKKTFEHVVEDFKNAEILAKILMSRREKRGAIDFNFP
EAKIILNGKGEVVDIKPYERRISNKIIEEFMLISNETIAEHFYWMGIPFVYRIHETPSLE
KMEELSKFISTFGYIIKGDKEEVHPKALQGIIEKIKGKKEEGAISTIMLRSLKQAKYSPE
CSGHFGLAAKFYCHFTSPIRRYPDLQIHRIIKESLNNKISGKRQEQLTTIVDYASVQSSE
KERKAELAERDVHDFYKALYMKDKVGQEFEGVVSSVTSFGIFVELDNTIEGLIRLANMND
DYYIYDESSYSVLGERTKKSYKIGDLVKIKVESVNVDFKEIDFEIVEKIEE
NT seq
2136 nt
NT seq
+upstream
nt +downstream
nt
atgataccaggacttaaagaaagtttgctaggattaataaatgaaagtgcatataatcct
ctaaaaaaagaagaattagcagaaatatttgatatacattcatcagaaatgccaatgttt
tataattttttaaatgaattagaagaagatggttatatctgctttactaaaaaaggaaaa
atagtatctcccaatcaaatgggatactttgttggaaaatttgtatcacacaaaaagggt
tttggatttgtagaatctgatgttgaatatacacaggatttatttatctcaagtgacaat
ataaatggtgctatgcataacgatagagttatggcagaaatagtagtacctgcaactgaa
gaaaagagagcagaaggaagaatagtaaaagtaataaagagagaaataactagaatagta
ggtactttccaatcaagtaaaacttttggatttgtaacaccagacaacaagaaatttact
aaagatatatatatacctaaaaaacattttagtggagcagtagataatgataaggtagta
tgtgaaattacagtatggccacaagaggatagaaaaccagaaggcaaaattatagagata
ctaggtcaaaaaggtgaaagaggcgtagaaatagattctataataagagaacatggtctt
ccagaagaatttccaaagaaagtattgcaagaagcagaagctgtagctgttgagattcct
caagaagagataaaaagaagaagagatttaagagatttaaacatatttactatagatgga
gatgacgcaaaagacttagatgatgccatatcaatagaagtattacctaatggaaacttc
aaactaggagttcacatagctgatgttacacattatgtaagagagaaaaataaacttgat
aaggaagccttaaaaagagctacatcagtttatttagtagataaagtaattccaatgttg
ccaaaaactctttcaaatggagtatgtagcttaaatccatttgaagataagttaactctt
tctatatttatggaaatagaccataaaggaaatgtggttaaacatgaaatatgtgaatct
gtaataaattcaaaagctagaatgacttatacagaagtatctgatatattagaaaaggat
gatgaaaaacttaaaaagacttttgaacatgttgttgaagattttaaaaatgctgaaatt
ttagctaagattcttatgtcaagaagagaaaaaagaggagctatagacttcaatttccca
gaggcaaagataattctaaatggaaaaggcgaagttgtagatataaagccatatgaaaga
agaatatctaataagataatagaagaatttatgcttataagtaatgagacaattgccgaa
catttttactggatgggaataccgtttgtgtatagaatacatgagacaccatctttggaa
aaaatggaagaattgagtaagtttatatctacatttggatatataataaaaggtgataaa
gaggaagtacatccaaaagcattacaaggtataatagagaaaataaagggcaaaaaagaa
gaaggagctatcagtactataatgcttcgttctttaaaacaagctaagtactcaccagaa
tgtagtggacattttggattagcagctaaattctactgtcactttacttcaccaataaga
agatatcctgaccttcaaattcatagaataataaaagaatctttaaataataaaataagt
ggaaaaagacaagaacagcttactactatagtggattatgcatctgttcaatcatccgag
aaagaaagaaaggcagagttagctgaaagagatgtacatgatttctataaggctctttat
atgaaggataaagttggtcaagaatttgagggtgttgtatctagcgtaacttcatttgga
atatttgttgagttagataatactatagaaggattgataagacttgcaaatatgaatgat
gattactatatttatgatgagagttcttatagtgttttaggagaaagaactaagaagtca
tataagataggagaccttgttaagataaaggttgaaagtgttaatgtagattttaaagaa
attgactttgagatagttgaaaaaatagaggagtag
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