Clostridioides difficile CD196: CD196_2996
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Entry
CD196_2996 CDS
T00997
Name
(GenBank) probable sigma54-dependent transcriptional regulator
Organism
cdc
Clostridioides difficile CD196
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
Sigma54_activ_2
AAA
AAA_5
AAA_2
Mg_chelatase
HTH_7
AAA_19
GAF
HTH_8
nSTAND3
AAA_22
AAA_7
GAF_2
bpMoxR
AAA_3
DUF815
AAA_16
SPOUT_MTase
Motif
Other DBs
NCBI-ProteinID:
CBA66060
UniProt:
A0A0H3NB14
LinkDB
All DBs
Position
complement(3551114..3552931)
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AA seq
605 aa
AA seq
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MGETMLSKLKEFQQEMIKYTETVASVLDVDIEIVDDRLIRISGTGLYKSKINESVVTEGF
IYDNVIQTGQELVVLDICDNQLCIECSHYMKCLNKVIIAVPIKYNNRTIGVIGAISTDKT
KKVEISAKIDNYLKFVNHICDLISMKIEEHEASKNSSRKMDMMIEIIENVEKGVIILDIN
SKISYINNIALKKLDIYKNIIENIVNIVSVESSSNGHELLEIDIDNKIYNINAKIIPVYP
YINQYDKIIIFDKTYINHKGHGKVNSGWGNSDIESIIGNSEAMLKVKERTKKLAKSNSTV
LITGESGTGKELIARAIHAEGSRWNKPFIAINCAAIPENLLESELFGYIKGAFSGASSGG
KVGKFELANEGVIFLDEIGDLSMPLQAKLLRVLQERKFARIGSNKLIDLDIRVIAATNKN
LLKLVNEGKFRDDLYYRLNVIPINLPPLRERKDDIEAIMMKFASKYSLELGIQLNKIEEN
VMNMLINYNWPGNIRELENAVEYMMNLVGDDGIIYKDMLPLDILNYYNINGNVCKNKDIN
IIFEDDIVGGIVENQERILSIKELELTYINKLLNKYGRDTKTKKKIAKDLGIGLATLYRK
LEEEQ
NT seq
1818 nt
NT seq
+upstream
nt +downstream
nt
atgggggaaactatgttaagtaaattaaaagaatttcaacaagaaatgataaaatacact
gaaacagtagctagtgtgttagatgtagatattgaaatagttgatgatagattaataaga
attagtggtacaggtctgtataaatcaaagataaatgaaagcgttgttacagaaggattt
atttacgacaatgttatacagacaggtcaggaattagtcgtattggatatatgtgataat
cagctttgtatagaatgttcccattacatgaaatgcctaaataaagtaataatagcagtt
ccaataaagtataataatcgaactataggagtaattggtgctattagtacagataaaact
aaaaaagtagaaataagtgcaaaaatagataattatttaaaatttgtcaatcatatatgc
gatttaatttctatgaaaatagaagaacatgaagcgtcaaaaaatagcagtagaaaaatg
gatatgatgatagaaatcattgaaaatgttgaaaaaggcgttataatactagacataaat
agcaaaatatcttatataaacaatatagctctaaaaaaattagatatatataaaaatata
atagaaaatatagtaaatatagtatctgttgaatcttcctcaaatggacatgaattacta
gaaattgatattgataacaaaatttataatataaatgccaaaataattccggtatatcca
tatataaatcaatacgacaaaataataatatttgacaagacatatatcaatcataaagga
catggaaaagtcaatagtggctggggaaatagtgatatagagtctataattggaaattca
gaggcaatgttaaaagtaaaagagagaactaagaaattagcaaagtcaaattcaactgta
cttataactggggaaagtggtacgggtaaagagctaattgctagggctatacatgctgaa
ggtagcagatggaacaagccatttattgcgataaactgtgctgctattccagaaaatctc
cttgaaagtgagctatttggctatataaaaggtgcatttagtggagctagtagtggaggt
aaagtaggtaaatttgaacttgcaaatgaaggtgttatatttcttgatgaaataggagat
ttgtcaatgcctttacaagcaaagttacttagagttttacaagagagaaaatttgcgaga
attgggtcaaataaacttatagatttagatataagagtgattgctgctacaaataaaaac
ttattgaaattagtaaatgaaggtaagtttagggatgatttatactatagattaaatgta
attcctataaatttgccacctcttagggaaagaaaggatgatattgaggcaataatgatg
aagtttgcttctaaatattctttagaattaggtattcagttaaataaaatagaagaaaat
gtaatgaatatgttgattaactataattggccgggaaatataagggaactggaaaatgca
gttgaatatatgatgaatttggttggagatgatggaataatatataaagatatgcttcca
ttggatattttaaattattataatattaatggaaatgtttgtaaaaataaggatataaat
ataatatttgaagatgacatagttggagggatagtagagaatcaggaaaggatactttca
attaaagaattagagttgacttacataaacaagttgttgaataagtatggaagagataca
aagacgaagaagaagatagcaaaggatttaggtataggtttggctacactatatagaaaa
ttggaagaggaacagtag
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