Corynebacterium diphtheriae CDCE 8392: CDCE8392_0924
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Entry
CDCE8392_0924 CDS
T01700
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
cdd
Corynebacterium diphtheriae CDCE 8392
Pathway
cdd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cdd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CDCE8392_0924 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cdd03019
]
CDCE8392_0924 (deaD)
03009 Ribosome biogenesis [BR:
cdd03009
]
CDCE8392_0924 (deaD)
Enzymes [BR:
cdd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CDCE8392_0924 (deaD)
Messenger RNA biogenesis [BR:
cdd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CDCE8392_0924 (deaD)
Ribosome biogenesis [BR:
cdd03009
]
Prokaryotic type
rRNA helicases
CDCE8392_0924 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
UvrA_inter
CMS1
adh_short
Motif
Other DBs
NCBI-ProteinID:
AEX71917
LinkDB
All DBs
Position
943507..945549
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AA seq
680 aa
AA seq
DB search
MSITDNATSGENELDIKILSESQDNSQVDEGTTINNDVVADVDDSRVANTSEATDSAQQE
ADSAEKDGFEALGLPDAILKAVAKVGFETPSPIQAQTIPVLMQGHDVMGLAQTGTGKTAA
FALPILSRIDVKKRHPQALILAPTRELALQVADSFQSFADHLGDIHVLPIYGGQAYGIQL
SGLRRGAQIIVGTPGRVIDHLEKGSLDISNLRFLVLDEADEMLNMGFQEDVERILEDTPE
DKQVALFSATMPNGIRRLSRDYMKDPHEIQVKSQTRTNTNITQRYLNVAHRNKLDALTRI
LEVTEFEAMIMFVRTKHETEEVAEKLRARGFSAAAINGDIAQAQRERTVDQLKDGRLDIL
VATDVAARGLDVERITHVFNYDIPNDTESYVHRIGRTGRAGRSGEAILFVTPRERRMLRS
IERATNAKLIEMDLPTVDEVNESRKAKFADSITESLEDDQVAIFRSLIKSYAEEHDVPLE
DIAAALATQARAGSEFLMKEPPPEKRRERRDRDDRRGGRDRFDRDDRRGGRDRGSRFERN
DDMQLYRLAVGKRQHVRPGAIVGALANEGGLSNKDFGRINIFVDHTLVELPKNMDPSVID
RLSDTRISGQLIHIEKDNGRPPRRNDDGDRGGYRGGDRFDRDDRRGGRGGRDRGGYRGGR
DRNDRGDRGGYRGGRGGYRD
NT seq
2043 nt
NT seq
+upstream
nt +downstream
nt
atgagcattaccgataacgccaccagcggcgagaacgagctggacattaagattttgtcg
gaatctcaggataattcgcaggtagacgaaggcaccaccatcaataatgatgtcgttgcc
gatgtagacgactccagggttgcgaacacttctgaggccaccgactccgctcagcaagaa
gcggacagtgcagaaaaagatggattcgaggctctaggtctcccagacgcaatcctgaag
gcagtcgctaaggttggcttcgaaacgccatccccaattcaggcgcagaccattccggtg
ttgatgcaggggcatgacgttatgggcctcgcgcagacgggtacaggtaagacggcagca
ttcgcgttgccaatcttgtcgcgtatcgacgtcaagaagcgccacccacaggcgttgatc
ctcgccccaactcgcgaacttgctttgcaggttgcagactccttccagtctttcgcagat
catttgggcgacatccacgtgctgccaatctatggcggtcaggcttacggcattcagctg
tccggcctgcgccgtggcgcacagatcatcgtgggtactccaggtcgtgtgatcgaccac
ttggagaagggctccctcgacatttccaacctccgcttcctcgttctagacgaggcagac
gagatgctcaacatgggcttccaagaagacgttgagcgtattttggaggacaccccagag
gacaagcaggttgctttgttctctgccaccatgccaaatggtattcgtcgtttgtctcgc
gactacatgaaggatcctcatgagatccaggtgaagtcgcagacgcgcaccaacacgaac
atcactcagcgttacctcaacgttgcacaccgcaacaagctcgatgccttgacccgtatc
cttgaggtcaccgagttcgaagccatgatcatgttcgtgcgtaccaagcatgaaactgaa
gaagtcgctgaaaagcttcgcgcacgcggattctccgctgccgctatcaacggcgacatc
gctcaggctcagcgtgagcgcaccgtcgaccagctcaaggacggtcgcctcgacatcctc
gttgctaccgacgttgctgcccgtggcctcgacgttgaacgcatcactcacgtgttcaac
tacgacattccaaacgacacagaatcctacgtccaccgcattggtcgtaccggtcgtgca
ggtcgttctggtgaagcaatcttgtttgtcactccacgtgagcgtcgcatgttgcgttcc
atcgagcgcgccaccaacgcaaagctgatcgaaatggatctgcctaccgttgatgaggtc
aatgagtcccgcaaggcaaagtttgctgactccatcaccgagtctcttgaagacgatcag
gtagcaatcttccgtagcctgattaagtcctacgcggaagagcacgatgttccactagaa
gacatcgccgccgcattggctacccaggcacgcgctggttccgaattcttgatgaaggag
ccaccaccagagaagcgccgcgagcgtcgtgaccgcgacgatcgtcgtggcggacgcgac
cgcttcgaccgcgatgaccgacgtggcggccgtgaccgtggctcccgcttcgagcgtaac
gacgacatgcagctctaccgcctagcagttggtaagcgccagcatgttcgccctggtgcc
atcgttggtgctctggcaaacgaaggtggcctgtccaacaaggacttcgggcgcatcaac
atcttcgttgatcacaccttggtcgagttgccaaagaacatggatccaagcgtgatcgat
cgcctcagcgatacccgtatctccggccaattgatccacatcgaaaaggacaatggccga
ccaccacgtcgtaacgacgacggtgaccgcggcggataccgtggcggcgaccgcttcgac
cgtgacgatcgtcgtggtggacgtggcggacgcgaccgcggcggataccgtggcggacgt
gaccgcaacgaccgtggtgatcgcggtggctaccgtggtggccgcggcggataccgcgac
taa
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