Corynebacterium diphtheriae CDCE 8392: CDCE8392_0945
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Entry
CDCE8392_0945 CDS
T01700
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
cdd
Corynebacterium diphtheriae CDCE 8392
Pathway
cdd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cdd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CDCE8392_0945 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cdd03021
]
CDCE8392_0945 (rho)
03019 Messenger RNA biogenesis [BR:
cdd03019
]
CDCE8392_0945 (rho)
Transcription machinery [BR:
cdd03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
CDCE8392_0945 (rho)
Messenger RNA biogenesis [BR:
cdd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
CDCE8392_0945 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATP-synt_ab
Rho_RNA_bind
Rho_N
AAA_25
Spore_III_AA
NACHT
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AEX71938
LinkDB
All DBs
Position
971419..973482
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AA seq
687 aa
AA seq
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MTNTDNSAQRNLAALRLPELRKIAAEMGLKGTSALRKGDLIAAINGTSAAHPTSVAPSEE
NKADAPKKERPARRRATKHVAQDAGSEPAPVVTEVAAPAEQNPAPKQEKEAPAGESEHQP
RRRRAVKTSVKTTQEEPAEVRVAEATDKSSEEQSAEAGSEDKDNYHYESRSAARRARRNR
ARREQREYNRPGAKDESEASQPENENSRNDVAPESSEVADNSNEQARSDQADQSTKSDSN
DNGREDNRRGNRHERGERGDRNDRGDRNRRNRRNRRGRDRDDNRDNRENNNNEPREDEVL
QNVAGILDIVDNNVAFVRTSGYHAGAADVYVNNQMIRRLGLRSGDAIVGQVRMNGENNHG
GHNRGRNRQKYNPLVRVDSVNGMTVEEAKARPEFAKLTPLYPNQRLRLETEPKVLTTRVI
DLIMPIGKGQRALIVSPPKAGKTTILQNIANAIATNNPECYLMVVLVDERPEEVTDMQRS
VKGEVIASTFDRPPSEHTAVAELAIERAKRLVEQGQDVVVLLDSITRLGRAYNNSSPASG
RILSGGVDSNALYPPKRFLGAARNIENGGSLTIIATAMVETGSAGDTVIFEEFKGTGNAE
LKLDRKISERRVFPAVDVNPSGTRKDELLLAPEEARIMHKLRRMLSALDNQQAIDLLIKQ
LKKTKSNGEFLMQVASSAPMAADAEED
NT seq
2064 nt
NT seq
+upstream
nt +downstream
nt
gtgactaatacagataacagcgcacagcgtaatctcgctgctctgcgtttgcccgaactg
cgcaaaattgccgcagaaatgggcctgaaaggtacgtccgccctgcgtaagggtgatcta
attgcggctattaacggtacctctgccgctcatccaacatctgtggccccctcggaagag
aacaaagcagatgcaccaaagaaggaacgtccagcacgtcgtcgtgcgactaagcacgtt
gcccaagatgccggttccgagccagcgccagtggtaacagaagttgctgcgcctgcagaa
cagaatcctgcgccaaaacaagaaaaagaagctccagctggtgagtccgagcatcagcca
cgccgtcgtcgtgcagtaaagacgtctgtgaaaacaacgcaggaggaacccgctgaggtt
cgcgtagcagaagctactgacaaatcttctgaagagcagtctgctgaggcaggttctgag
gataaagataactaccactacgagtctcgttctgccgctcgacgtgcccgtcgtaaccgt
gctcgtcgtgagcagcgcgaatacaatcgccctggcgctaaagatgagagcgaagcatct
cagccagaaaatgagaactctcgcaacgacgtcgcaccagaatcctctgaagtagcagac
aacagcaacgagcaagctcgttctgatcaagctgatcaatccaccaagtcggactctaac
gacaatggtcgtgaggacaaccgccgtggcaatcgacacgagcgtggggagcgtggcgat
cgtaacgatcgtggggaccgcaaccgtcgtaatcgtcgtaaccgtcgtggccgtgaccgc
gatgataaccgtgataatcgcgaaaataacaacaacgaaccacgtgaagatgaagtcttg
caaaatgttgcaggcatcttggacatcgtggacaacaatgttgctttcgtgcgtacctcc
ggttaccacgccggtgccgctgacgtctatgtgaacaaccagatgattcgccgcttggga
ttgcgttctggcgacgcaattgtgggccaagttcgtatgaatggcgaaaacaaccacggc
ggacacaaccgtggccgtaaccgccagaagtacaacccattggtacgcgttgattcagtc
aacggaatgacggtggaagaagcaaaggcacgccctgagtttgccaagctcaccccgttg
taccccaaccagcgtctgcgcctcgaaaccgagcctaaggttttgactacccgtgtgatc
gatttgatcatgccgattggtaaaggtcagcgtgctttgatcgtgtctcctcctaaggct
ggtaagaccacgatcctgcaaaatatcgcaaacgctattgctaccaacaacccagagtgc
tacctcatggttgttttggtggatgagcgtccggaagaagttaccgatatgcagcgctct
gtgaagggcgaagttattgcatcgaccttcgaccgtccaccaagtgagcacaccgctgtt
gcagagctcgctattgagcgtgcgaagcgccttgtggagcagggacaggatgttgttgtc
ctcctagactccattacgcgtcttggccgtgcctacaacaacagctcgcctgcatccggc
cgaattctctccggtggtgtggactccaatgcgttgtacccaccaaagcgtttccttggt
gcggctcgcaacatcgaaaatggtggatcgcttacgattatcgccacggccatggtcgag
actggttctgccggcgacaccgtgatcttcgaggaattcaagggcaccggtaacgccgag
ctgaagctggatcgtaagatttctgagcgccgtgtattcccggctgtcgacgtcaaccca
tcgggtacccgtaaggatgagttgctgctggctccggaagaagctcgcattatgcacaaa
ctccgccgcatgctttctgctttggataatcagcaggctatcgatttgttgatcaagcag
ctcaagaagaccaagtccaatggcgaattcttgatgcaggtagcaagttctgcgccgatg
gctgcggatgctgaggaggactaa
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