Corynebacterium diphtheriae HC02: CDHC02_0926
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Entry
CDHC02_0926 CDS
T01694
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
cde
Corynebacterium diphtheriae HC02
Pathway
cde03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cde00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CDHC02_0926 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cde03019
]
CDHC02_0926 (deaD)
03009 Ribosome biogenesis [BR:
cde03009
]
CDHC02_0926 (deaD)
Enzymes [BR:
cde01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CDHC02_0926 (deaD)
Messenger RNA biogenesis [BR:
cde03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CDHC02_0926 (deaD)
Ribosome biogenesis [BR:
cde03009
]
Prokaryotic type
rRNA helicases
CDHC02_0926 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
UvrA_inter
CMS1
adh_short
Sp-DndD
Motif
Other DBs
NCBI-ProteinID:
AEX76418
LinkDB
All DBs
Position
962817..964865
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AA seq
682 aa
AA seq
DB search
MSITDNATSGENELDIKILSESQDNSQVDEGTTINNDVVADVDDSRVANTSEATDSAQKE
ADSAEKDGFEALGLPDAILKAVAKVGFETPSPIQAQTIPVLMQGHDVMGLAQTGTGKTAA
FALPILSRIDVKKRHPQALILAPTRELALQVADSFQSFADHLGDIHVLPIYGGQAYGIQL
SGLRRGAQIIVGTPGRVIDHLEKGSLDISNLRFLVLDEADEMLNMGFQEDVERILEDTPE
DKQVALFSATMPNGIRRLSRDYMKDPHEIQVKSQTRTNTNITQRYLNVAHRNKLDALTRI
LEVTEFEAMIMFVRTKHETEEVAEKLRARGFSAAAINGDIAQAQRERTVDQLKDGRLDIL
VATDVAARGLDVERITHVFNYDIPNDTESYVHRIGRTGRAGRSGEAILFVTPRERRMLRS
IERATNAKLIEMDLPTVDEVNESRKAKFADSITESLEDDQVAIFRSLIKSYAEEHDVPLE
DIAAALATQARAGSEFLMKEPPPEKRRERRDRDDRRGGRDRFDRDDRRGGRDRDRGSRFE
RNDDMQLYRLAVGKRQHVRPGAIVGALANEGGLSNKDFGRINIFVDHTLVELPKNMDPSV
IDRLSDTRISGQLIHIEKDNGRPPRRNDDGDRGGYRGGDRFDRDDRRGGRGGRDRGGYRG
GRDRNDRGDRCGYRGGRGGYRD
NT seq
2049 nt
NT seq
+upstream
nt +downstream
nt
atgagcattaccgataacgccaccagcggcgagaacgagctggacattaagattttgtcg
gaatctcaggataattcgcaggtagacgaaggcaccaccatcaataatgatgtcgttgcc
gatgtagacgactccagggttgcgaacacttctgaggccaccgactccgctcagaaagaa
gcggacagtgcagaaaaagatggattcgaggctctaggtctcccagacgcaatcctgaag
gcagtcgctaaggttggcttcgaaacgccatccccaattcaggcgcagaccattccggtg
ttgatgcaggggcatgacgttatgggcctcgcgcagacaggtacaggtaagacggcggca
ttcgcgttgccaatcttgtcgcgtatcgacgtcaagaagcgccacccacaggcgttgatc
ctcgccccaactcgcgaacttgctttgcaggttgcagactccttccagtccttcgcagat
catttgggcgacatccacgtgctgccaatctatggcggtcaggcttacggcattcagctg
tccggcctgcgccgtggcgcacagatcatcgtgggtactccaggtcgtgtgatcgaccac
ttggagaaaggctccctcgacatttccaacctccgcttcctcgttctggacgaggcagac
gagatgcttaacatgggcttccaggaagacgttgagcgcattttagaggacaccccagag
gacaagcaggttgctttgttctctgccaccatgccaaatggtattcgtcgtttgtcccgt
gactacatgaaggatcctcatgagatccaggtgaagtcgcagacccgcaccaacacgaac
atcactcagcgttacctcaacgttgcacaccgcaacaagctcgatgccttgacccgtatc
cttgaggtcaccgagttcgaagccatgatcatgttcgtgcgtaccaagcatgaaactgaa
gaagtcgctgaaaagcttcgcgcacgcggattctccgctgccgctatcaacggcgacatc
gctcaggctcagcgtgagcgcaccgtcgaccagctcaaggacggtcgcctcgacatcctc
gttgctaccgacgttgctgcccgtggtctcgacgttgaacgcatcactcacgtgttcaac
tacgacattccaaacgatacggaatcctacgtccaccgcatcggtcgtaccggtcgtgca
ggtcgttctggtgaagcaatcttgttcgtcactccacgcgagcgtcgcatgttgcgttcc
atcgagcgtgccaccaacgcaaagctgatcgaaatggatctgccaaccgttgatgaggtc
aatgagtcccgtaaggcaaagtttgctgactccatcaccgagtctcttgaagacgatcag
gtagcaatcttccgtagcctgattaagtcctacgcggaagagcacgatgttccactagaa
gacatcgccgccgcattggctacccaagcacgcgctggttccgaattcttgatgaaggag
ccaccaccagagaagcgccgcgagcgtcgtgaccgcgacgatcgtcgtggcggacgcgac
cgcttcgaccgcgatgaccgccgtggcggccgtgaccgtgaccgtggctcccgcttcgag
cgtaacgacgacatgcagctctaccgcctagcagttggtaagcgccagcatgttcgccct
ggtgccatcgttggtgctctggcaaacgaaggtggcctgtccaacaaggacttcggtcgc
atcaacatcttcgttgaccacaccttggtcgagttaccaaagaacatggatccaagcgtg
atcgatcgcctcagcgatacccgtatctccggccaattgatccacatcgaaaaggacaat
ggccgaccaccacgtcgtaacgacgacggtgaccgcggcggataccgtggcggcgaccgc
ttcgaccgtgacgatcgtcgtggtggacgtggtggacgcgaccgcggcggataccgtggc
ggacgtgaccgcaacgaccgtggtgatcgctgtggctaccgaggtggccgcggcggatac
cgcgactaa
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