Corynebacterium diphtheriae HC02: CDHC02_1323
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Entry
CDHC02_1323 CDS
T01694
Symbol
hrpA
Name
(GenBank) ATP-dependent helicase
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
cde
Corynebacterium diphtheriae HC02
Brite
KEGG Orthology (KO) [BR:
cde00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cde03019
]
CDHC02_1323 (hrpA)
Enzymes [BR:
cde01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CDHC02_1323 (hrpA)
Messenger RNA biogenesis [BR:
cde03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
CDHC02_1323 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_19
AAA_22
nSTAND3
WHD_HA2
AAA_11
ResIII
NACHT
APHB_HrpA
T2SSE
nSTAND_NTPase5
ABC_tran
PhoH
TsaE
Motif
Other DBs
NCBI-ProteinID:
AEX76815
LinkDB
All DBs
Position
1414529..1418473
Genome browser
AA seq
1314 aa
AA seq
DB search
MGKRNLKHSNRRVKPTTQDSPEVKELKASCMSQLSGLGLALHRSFERRITKAHSTKALEA
IAQDLATALKSIEKRRSSIPVISYPDNLPVSSQRDEIAAAIQENQVVIIAGETGSGKTTQ
IPKICLDLGRGITGLIGHTQPRRLAARTVAERIADELDQPIGESVGYAIRFDDCVSPSTS
IKLMTDGILLAEMQRDRYLNAYDTIIIDEAHERSLNIDFILGYLKQLLPKRPDLKVIITS
ATIDPERFAHHFSDENGTPAPIIEVSGRTYPVEVLYRPLQLEDGTSLIDVDPIDGLISAI
KELMSYGDGDILCFFAGESDIRDAMEAIKEQRWRNVEVTPLFGRLSNQEQHKVFTSHTGR
RIVLATNIAETSLTVPGIHFVVDLGTARISRYSSRTKVQRLPIEPISQASARQRSGRCGR
VADGIAIRLYSEEDFLSRPEFTDPEILRTNLANVILQMASLRLGHIDDFPFIQAPDTKSI
RDGILLLHELGALTTTDTRTDLPRLTTIGKTLARIPLDPRLGRMLIEAERLGCLAHVMVL
VAALSIQDVRERPLDYQAQADQLHARFKDPQSDFSSYLKLWAYINQRRDELSGNAFKKVM
QQEFLHYMRIREWFDLVRQLKSIGEQVGWKSFERSDATDNDCIHQALLAGLLSHIGIKEG
DFREFVGARNTRFMVFPGSSLAKKPPQFVMAGELVETSRLWARDVAAIDPRWVEPLAQNL
LKHQYSEPHWSLKRGAAMVYQRSTLYGVPIVVDRLINLATIDAVGAREIFIREALINGQW
TTHHSFFKNNMQKLEAVNTLEEKARRRDIVVTEDTLYEFYNDRLPQSVVSTRAFDHWWKK
TRTQTPDLLDFDPDKLISDSAEEVNAERYPDSWYDNGVELELRYRFEPGHPDDGVTVNVP
VPYLASLEESGFEWLVPGFIQELLTASLKTLPKHLRKKIVPAPNYANLIQPRISFRKGPL
TQAITNALKDAGITGIEAEDFDLSALPDHLRITFAAIDKHGKVIDKDKNLARLKTRQKNK
IRASALKIGKAVHQSAVTTWTSSTLGKIPEEVSTKVDGQLIKTYPALVIGEQGFSVEAKP
TRAEADASMLTATLAMLMKASNINTQKMLNGLPLQQRVAVENYPHGSSNGLVQDVKAAVI
RDLLIERGGPVRSPEEFDVLKKEITPKVPGLTRQAVVQLAPSINCYLKTRDEVAHWEGDA
IDDISRQLDFLLPPFAVSHHGIRHLTRLPRLCEAITIRLDSMSRDSYKDAELQQVINRLE
NALYAKANRGGIPKSKINDIAWKIQELRVSLFAQRLGTAEKVSERKIHKLIEAL
NT seq
3945 nt
NT seq
+upstream
nt +downstream
nt
atgggcaaacggaatctaaagcactctaaccgacgcgtaaaaccaacgactcaagattca
ccagaagttaaagagttaaaagcatcatgcatgtcccaattatcaggtttgggacttgcc
ctccaccggtcttttgagcgccgtatcactaaagcgcacagcacgaaggctttagaagct
attgcacaggacctcgcaacagcgcttaaatcaattgaaaaacgacgcagcagtatccca
gttatctcctatccggacaatctcccagttagttcacaacgggacgagatcgctgctgcg
atccaagaaaaccaagtcgtcatcatcgctggcgaaacaggttccggtaaaactactcag
attcctaaaatatgtcttgatttgggacgcggaattactggcttaattgggcacacgcag
ccacgtcgattagccgcacgaacggttgccgaacgtattgcagacgaattagatcagcca
atcggtgaatctgttggttacgcgattcgcttcgacgattgtgtctctcccagtacgtct
atcaagctcatgacagacggtattttactagcagaaatgcaacgtgatcgttacctcaat
gcttacgacacaatcatcattgacgaggcacacgaacgaagcctgaatatcgatttcatc
cttggatatctcaaacagttacttcctaagcgtccagatctaaaagtcatcatcacatcg
gcaaccattgatcctgaacgattcgcgcaccatttttcggacgaaaatggtaccccagca
cccattattgaagtgtctgggcgaacctacccagtggaggtactttatcgccccctccag
cttgaagatggtacgtcgcttatcgacgtcgaccccatcgacggcctaatcagcgccatt
aaggagcttatgagctacggtgacggtgacatcctctgtttctttgccggcgaatcagat
attcgtgacgccatggaagctataaaagagcaacgatggcgaaatgttgaagtcacaccg
ctatttggtcgactgtctaaccaagaacaacataaagtgtttacatcacatactggccgc
cgaattgttcttgcaacaaatattgctgaaacatcactgactgtccccggtattcacttt
gttgtcgatctaggtacagcacgcatatctcggtattccagtcgtacaaaagtacaacga
ttacccatcgaaccgatttcccaagccagcgctcgtcaacgttccggccgctgtggacgt
gtcgccgatggcattgcgattcggttgtactccgaagaggactttctctcacgccctgaa
ttcaccgatccagaaattctgagaacgaatttggccaacgtgattctgcagatggcctca
ctacgcctaggccatatcgacgatttccccttcatccaagcgcccgataccaagtcgatc
cgtgacggaatactgttgttgcacgaacttggtgcattaaccacaacggatacgcggact
gatcttccacggttaacaacaatcggcaagacacttgccagaattccgctcgatccacga
ctaggcagaatgctcatcgaagcagaacgtctaggctgcctcgcccatgtcatggtgtta
gtagctgcgctgtcgattcaagacgtgcgcgagcggcctcttgactatcaggcgcaagca
gatcaactccacgctcgattcaaagatcctcaaagcgacttttccagctatctcaaatta
tgggcgtacatcaatcagcgtcgcgatgaattgtcaggaaacgcatttaaaaaggtgatg
caacaagagttccttcactatatgcggattcgtgaatggtttgatctcgttcgccaacta
aaatccataggtgaacaagtcggctggaaatcgtttgaacggtcggacgcaaccgacaac
gattgcattcaccaagctctcttagcggggcttttgtcccatatcggcatcaaagaaggc
gattttcgagaatttgtaggcgcccgcaatacgcgttttatggtcttccctggttcaagt
cttgcgaagaaacctccacaattcgttatggctggagagcttgtcgaaacgtcaagactg
tgggcacgcgacgtcgccgcaatagatccacgttgggtcgagcctctggcacaaaacttg
ctcaaacaccaatattcggagccacattggtctctcaaacgtggtgcagcgatggtttac
cagcgttcaacgctctatggagtgccgatcgttgtcgatcgactgatcaatctagctacc
atcgatgccgttggcgcacgcgagatcttcatccgtgaagctttaattaatgggcaatgg
actacccatcacagctttttcaaaaacaatatgcagaaactagaagctgtaaatactttg
gaggaaaaagcaaggcgacgcgatatcgtagtaaccgaagataccctgtacgagttttac
aatgatcggctcccacaatctgtcgtttccacccgagcgtttgatcattggtggaagaaa
acccgcacacagacacctgatttactcgattttgatcctgacaaacttatttctgatagc
gctgaagaagttaatgcagaacggtatccagatagttggtacgacaacggtgtagagcta
gaactccgttatcgttttgaacctggccatcctgacgacggagttacagtcaacgttcca
gttccatatcttgcgtcacttgaggaaagtggtttcgaatggcttgttcccggttttatc
caagagctgctgactgcttctttaaaaacacttccaaaacatctacgaaaaaaaattgtt
ccggctccgaactatgcgaatctgattcagccacggatttcgttccgaaaaggaccgctt
actcaggctataacgaatgcgctcaaagacgccggaattacggggatcgaagcagaggac
tttgatttatcagcgcttccagatcatttacggattacattcgcagcaatagacaaacat
ggaaaggtaatcgacaaagataagaaccttgctcgtcttaaaacacgtcaaaaaaataaa
attcgtgcgtctgctctcaaaatcggaaaagcagtccaccaaagcgccgtcacaacttgg
acatcctcaactctaggaaagattcctgaagaagtttccacaaaagtagacggccaactc
ataaagacttatcctgccttagtaataggagaacaaggattctcagtcgaggccaaacct
acccgcgccgaagctgacgcgtccatgctgacggcaacgttagcgatgctgatgaaggca
tcaaatattaacacccaaaaaatgcttaacgggttgcctcttcaacaacgtgttgcagtt
gagaattatcctcacggcagcagcaatggattagtacaagatgtcaaagctgcggtgatc
cgtgacctactcatcgaacgcggcggaccagtacgttcaccagaagaatttgatgtcctt
aaaaaggaaattacccccaaagtgccggggctgacgcgtcaagccgtcgtgcaattagcc
ccttctatcaattgttatctcaaaactagagacgaagttgcgcactgggaaggtgacgcc
atcgatgatattagtaggcaattagatttcctgctccccccatttgcagtatcacatcat
ggaattcgtcatctcacgcgattaccgcggctttgcgaagctataaccattcggctggat
tcaatgagccgagattcttataaggatgcggaactacaacaggttattaatagactcgaa
aatgccctctatgcgaaggccaatcgtggtggaattccaaaatcgaaaatcaacgatatt
gcgtggaaaattcaagagttacgggttagtctttttgctcagagactaggtactgcagaa
aaagtatcggaacgaaagatccataagctcattgaagctctttaa
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