KEGG   Cryptococcus decagattii: 89987792
Entry
89987792          CDS       T10966                                 
Symbol
IAS62_001017
Name
(RefSeq) uncharacterized protein
  KO
K12623  U6 snRNA-associated Sm-like protein LSm4
Organism
cdec  Cryptococcus decagattii
Pathway
cdec03018  RNA degradation
cdec03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:cdec00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    89987792 (IAS62_001017)
  09123 Folding, sorting and degradation
   03018 RNA degradation
    89987792 (IAS62_001017)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cdec03019]
    89987792 (IAS62_001017)
   03041 Spliceosome [BR:cdec03041]
    89987792 (IAS62_001017)
Messenger RNA biogenesis [BR:cdec03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     89987792 (IAS62_001017)
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     89987792 (IAS62_001017)
Spliceosome [BR:cdec03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    89987792 (IAS62_001017)
SSDB
Motif
Pfam: LSM SM-ATX
Other DBs
NCBI-GeneID: 89987792
NCBI-ProteinID: XP_064718967
LinkDB
Position
2:join(466236..466238,466287..466328,466418..466567,466682..466778,466829..466861,466922..467040)
AA seq 147 aa
MLPLSLLTAAQGKPMLVELKNGVTFNGHLVECDTFMNVTLREVYQTSADGERFWKMKEMF
IKGNIIKYFRIADDILEQAAAEQDKARAANRARGGTRGGRGGPGGARGGRGGPPGRGGPP
GRGGGPGRGGFNQRGRGGPPRGGAPRP
NT seq 444 nt   +upstreamnt  +downstreamnt
atgcttcctctctcacttcttacagccgctcaaggcaagcccatgcttgtggagctgaag
aatggagtcaccttcaacggccatctagtcgaatgcgacactttcatgaacgttactctt
cgagaggtttaccaaacttcagcggacggcgagcgattctggaaaatgaaggagatgttt
attaagggtaacattattaagtacttccgtatagcagacgacattctggaacaagcagct
gcggaacaggacaaggcgcgagcagcgaacagagcgagaggtggaactagaggtggacgg
ggtggaccaggaggtgctcgaggaggtcggggtggaccaccagggcgaggcggccccccc
ggtcgagggggtggaccgggacgtggcggattcaaccaaaggggtagaggaggaccacct
agaggcggagcgccgcgaccataa

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