Cryptococcus decagattii: 89988183
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Entry
89988183 CDS
T10966
Symbol
IAS62_001408
Name
(RefSeq) polyadenylation factor subunit 2
KO
K15542
polyadenylation factor subunit 2
Organism
cdec Cryptococcus decagattii
Pathway
cdec03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cdec00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
89988183 (IAS62_001408)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cdec03019
]
89988183 (IAS62_001408)
Messenger RNA biogenesis [BR:
cdec03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
89988183 (IAS62_001408)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_THOC3
WD40_CDC20-Fz
Beta-prop_IFT122_1st
Beta-prop_WDR5
Beta-prop_WDR3_1st
WD40
WD40_Prp19
Beta-prop_EML_2
WD40_WDHD1_1st
Beta-prop_WDR3_2nd
WDR55
DSE1_N
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
Beta-prop_IFT140_1st
EIF3I
Beta-prop_EML
ANAPC4_WD40
WD40_Gbeta
Beta-prop_Aladin
Beta-prop_WDR36-Utp21_2nd
Beta-prop_WDR36-Utp21_1st
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_WDR19_1st
Beta-prop_EIPR1
WDR90_beta-prop_4th
eIF2A
Beta-prop_TEP1_C
Beta-prop_RIG_2nd
WD40_MABP1-WDR62_1st
ASA1
Beta-prop_NOL10_N
Beta-prop_WDR35_TULP_N
Beta-prop_WDR75_1st
CFAP251_N
Tricorn_2nd
Beta-prop_DCAF4
Beta-prop_WDR41
NBCH_WD40
Beta-prop_Vps41
PEP5_VPS11_N
Beta-prop_HPS5
Ge1_WD40
WD40_RFWD3
B-prop_COPA_B_2nd
PAC11
MIOS_WD40
Beta-prop_SCAP
Motif
Other DBs
NCBI-GeneID:
89988183
NCBI-ProteinID:
XP_064719357
UniProt:
A0ABZ2ARN3
LinkDB
All DBs
Position
2:join(1499813..1500058,1500108..1500176,1500223..1500327,1500384..1500729,1500777..1500897,1500948..1502277)
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AA seq
738 aa
AA seq
DB search
MTAPTVPSDQHGNLLPGPSKPAANGTWRPSRYLEPLHPDNEEVLEQAAYQAAVTRSSGDD
RKRKIKPRRTVDYQGGVQKWRMLNKLKGIHGFRPAIHPNPSDIVNFLPPVALQSNPSTSI
CDYWVHTSINKERSPTRVVRWTPDARRLLTGNDKGQFTLWNGASFNYESITQVHDDSIRS
FTYSHNGQALVSADKGGTIKYFTPHLTNIHGFQGHREACHDVSWSPNDERFVTCGDDGLV
KIWSYREAKEEKSLSGHGWDVRCVDWHPTKGLIVSGSKDMLVKFWDPRTGKDLSTLHSSK
STINTCRWSPDGHLVATAGQDSVIRLFDIRTFRELEVLKGHEKEVNCIEWHPIHHSLLVS
GDALGTINYFSLLSPTPSTPLTTLSAAHEDAVFSLSFHPLGHILCSGSKDFTARFWCRAR
PPGGQEFDKWHLSEEGAAQKELERITKREWGTGTGAGTNQSPAANAAGGGGEVALPGLSN
LVAAVNNTVKTGPTAANGPPGLSGLPGLPGLPGLGAPNVHSGTPPSRVSTPSSMGPPGPG
AQTQAQSQGQGQGQGQGQGGQFGRGRGALPSQNDMLRHNHVPRGFADRDRNGGGDRGGMD
RDRDPRGRQDPRGNQMYGRGPGAPPGPPGQGSGPGQGGYNYPPAPPNYPPYPPSSYPPPP
PNNNNNNNNNPSGYLPAPNYAMPPGQGGLPQHYPYNRPPQGPPQNGPGGQGNYGAPASGG
YGQYGGSGGGGYGRDGRR
NT seq
2217 nt
NT seq
+upstream
nt +downstream
nt
atgacagcgcccactgtcccctcagaccagcacggcaacctgctcccaggcccctcaaag
cccgctgccaacggcacatggcgcccgtcccgctacctcgaacccctccacccagacaac
gaagaggtcctcgaacaggctgcctaccaggccgcagtcactcgttccagcggcgacgac
aggaagcgaaagataaagcctcgaagaacagtcgactaccaaggtggcgtgcagaaatgg
agaatgttgaacaagctcaagggcatccacggattcagaccagccatacatcccaaccca
tctgacattgtcaattttcttcctcctgtagcactccagtcaaatccatccacctctata
tgtgactactgggtccacacctcgataaataaagaacgttcccctacccgtgtcgtcaga
tggacaccagacgcccgacgtctgcttacaggtaacgacaagggtcaattcacactctgg
aacggtgcttctttcaattacgagtccattacgcaagtacatgacgactctatccggagc
tttacctactcgcacaacggccaagcgcttgtttcagccgacaagggcggcacgatcaag
tactttacaccgcatctgacaaatatacatgggtttcagggccatcgagaagcttgtcat
gatgttagttggagtccgaacgatgagcgtttcgttacctgtggagacgatggactggtc
aagatttggagctatagagaagccaaggaagaaaaaagtctaagtggccacggctgggat
gtgagatgcgttgattggcacccaacaaaaggtcttattgtttccggctccaaagatatg
ctcgtcaaattctgggatccacgaacaggcaaagacctctctacgctccactcttccaaa
tccaccatcaacacatgtcgatggtcccccgatggccatctcgtggcaactgccggccaa
gattcagtcatccgtctgtttgacattcgtactttccgcgagctggaagtcttaaagggc
cacgagaaagaagtcaattgcattgaatggcaccccatccatcactctttgctcgtttcc
ggcgacgcgctcggtactatcaactacttttccctcctctctcccactccatctacaccc
ctcaccacgctttcagccgctcatgaagatgcagtcttctctctctccttccatccgctt
ggccatatcctctgttcgggatcaaaggatttcacagcacgattctggtgtcgtgcaaga
ccgccgggaggacaagaatttgataaatggcatctttccgaggaaggcgctgctcaaaaa
gaacttgagcgtatcaccaagcgtgaatggggtaccggtaccggcgcggggacgaaccag
tctcctgctgcgaatgcagctggtggtggtggcgaggttgctttacctggtttatccaac
ctcgtcgcggctgtcaacaataccgtcaagactggcccgacggcagccaatggccccccc
ggcctctcaggtcttccaggtcttccgggtcttccggggttgggtgcacccaatgttcat
agcggcaccccgccgtcgcgcgtatccacgccttcatccatgggaccacccggtcccggc
gcacaaacacaggcacaatcacaaggacaaggacaaggacaaggacaaggacaaggcggt
cagtttggaagaggaagaggggcgcttcctagtcaaaatgatatgcttcggcataatcat
gtcccccgtggatttgcagatcgggataggaatggtggaggagacagaggcgggatggat
agggatagagatccacgagggaggcaagacccaagaggtaatcaaatgtatggtcgtgga
ccaggggctcctcccggacctccgggacaaggatcaggaccaggtcaaggaggatacaat
tacccacctgctcctcccaattatcccccttacccgccctcatcttacccgcctcctcct
cccaacaacaacaacaacaataacaacaacccatctggttatctgccagcgcccaattat
gctatgcctcctggacaaggtggtctacctcaacattatccttataatcggcctccacag
ggacctcctcagaatggcccaggtggacaagggaattatggcgctcccgcatctggtggg
tatggccagtacggcggcagcggtggcggtgggtacggccgggatggacggagataa
DBGET
integrated database retrieval system
