Cryptococcus decagattii: 89988465
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Entry
89988465 CDS
T10966
Symbol
IAS62_001691
Name
(RefSeq) ATP-dependent RNA helicase SUB2
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
cdec Cryptococcus decagattii
Pathway
cdec03013
Nucleocytoplasmic transport
cdec03015
mRNA surveillance pathway
cdec03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cdec00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
89988465 (IAS62_001691)
09122 Translation
03013 Nucleocytoplasmic transport
89988465 (IAS62_001691)
03015 mRNA surveillance pathway
89988465 (IAS62_001691)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cdec03019
]
89988465 (IAS62_001691)
03041 Spliceosome [BR:
cdec03041
]
89988465 (IAS62_001691)
Enzymes [BR:
cdec01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
89988465 (IAS62_001691)
Messenger RNA biogenesis [BR:
cdec03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
89988465 (IAS62_001691)
Spliceosome [BR:
cdec03041
]
Complex C
Other components
EJC/TREX
89988465 (IAS62_001691)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
89988465 (IAS62_001691)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
AAA_19
Ned1_M
CMS1
Motif
Other DBs
NCBI-GeneID:
89988465
NCBI-ProteinID:
XP_064719635
UniProt:
A0ABZ2APE3
LinkDB
All DBs
Position
3:complement(join(301919..302113,302163..302271,302325..302566,302618..302736,303219..303520,303567..303675,303727..303794,303851..304035))
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AA seq
442 aa
AA seq
DB search
MTNSTNLNLITKMSRPDEEELVDYDEAAEEILPPAPAAETNGDKADGDKKGSYVGIHSTG
FRDFLLKPELLRAISDLGFEHPSEVQQECIPQAILGTDVLCQAKSGMGKTAVFVLAALQQ
IEPVDGEVSIIILCHTRELAYQIKNEFTRFSKFMTNVRTGVFYGGTPISADQEILANKEK
CPHIVVGTPGRTMALVRDKKLNASKVKHFVLDECDKMLEQLDMRRDVQEIFRATPHHKQV
MMFSATLSKDIRATCKKFMQSPLEIYVDDETKLTLHGLQQFYLKLEEREKNRKLNDLLDN
LEFNQVCIFVKSVQRATQLDALLQECNFPSICIHSGLQQAERISRFQQFKAFEKRILVAT
DIFGRGIDVERVNVVINYDAPADADSYLHRVGRAGRFGTKGLAISFVSSDADQEVLQKIQ
ERFTVAIPTLPETVDPATYMTS
NT seq
1329 nt
NT seq
+upstream
nt +downstream
nt
atgacaaacagcaccaatctcaacttgatcaccaaaatgtcccgacctgacgaagaagaa
ctcgttgactacgatgaggccgctgaggagatcctgccccccgcgcccgccgccgaaacc
aacggcgacaaggcagatggtgacaagaagggttcttatgtcggtatccactccaccggt
ttcagggattttcttttgaagcccgagctcctccgagccatctctgatctcggttttgaa
cacccctctgaggttcaacaggaatgtattccccaggccatcctcggtacagatgttctg
tgtcaagccaagtctggtatgggtaagacggctgtgtttgtgcttgctgcgttgcaacag
attgagcctgttgatggcgaggtttctatcattattctctgtcacactcgagagcttgcc
tatcagatcaagaatgagtttacccgtttctccaagttcatgaccaatgtccgaactggt
gtcttttacggtggtactcccatttcggccgaccaggagattcttgccaacaaggaaaag
tgccctcacattgttgttggtacccctggccgaactatggccctcgtccgtgacaagaag
ctcaacgccagtaaggtcaagcactttgttcttgacgagtgcgacaagatgctcgaacaa
cttgatatgcgacgagacgttcaggaaatcttccgagccacccctcaccacaagcaggtt
atgatgttctctgccaccctttccaaggacatccgagccacttgcaaaaagtttatgcag
agtcctcttgaaatttacgttgatgacgagaccaagttgactctccacggtcttcaacaa
ttctacctcaagctcgaggagagggagaagaacaggaagctcaacgacttgttggacaat
ctcgaattcaaccaggtctgcatctttgtcaagtctgttcaacgtgccactcagctcgat
gctctcttgcaagagtgcaacttcccctccatctgcatccactctggtcttcagcaagcc
gagcgaatctctcgattccaacagttcaaggcttttgagaagcgaattctcgttgctact
gacattttcggtcgaggtatcgatgttgagcgagtgaacgttgtcatcaactatgacgct
cccgcagatgccgactcttacctccaccgtgtcggtcgtgctggtcgatttggtaccaag
ggtcttgccatctcctttgtctcgagcgatgccgaccaagaggtcctccaaaagatccag
gaacgattcaccgttgctatccccactttacccgagactgtcgatcccgctacttatatg
acttcgtaa
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