KEGG   Cryptococcus decagattii: 89989144
Entry
89989144          CDS       T10966                                 
Symbol
IAS62_002371
Name
(RefSeq) uncharacterized protein
  KO
K12599  antiviral helicase SKI2 [EC:5.6.2.6]
Organism
cdec  Cryptococcus decagattii
Pathway
cdec03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:cdec00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    89989144 (IAS62_002371)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cdec03019]
    89989144 (IAS62_002371)
Enzymes [BR:cdec01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     89989144 (IAS62_002371)
Messenger RNA biogenesis [BR:cdec03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    eIF4F and regulatory proteins
     89989144 (IAS62_002371)
  mRNA degradation factors
   3'-5' decay
    Ski complex
     89989144 (IAS62_002371)
SSDB
Motif
Pfam: DSHCT DEAD Ski2_N MTR4_beta-barrel MTR4-like_stalk Helicase_C ResIII DEXQc_Suv3 EpuA TerB_C HTH_Tnp_ISL3 CENP-B_dimeris
Other DBs
NCBI-GeneID: 89989144
NCBI-ProteinID: XP_064720306
UniProt: A0ABZ2ARC5
LinkDB
Position
4:complement(join(64018..64026,64081..64100,64155..64323,64379..64846,64899..65126,65187..65317,65366..65495,65550..65735,65792..66154,66204..66271,66328..66423,66573..67075,67123..67229,67278..67382,67432..67564,67618..67763,67816..67848,67891..67986,68037..68233,68283..68650,68712..68929))
AA seq 1257 aa
MEQATDLEDSVFLELLNTAVNPSSVDAIPSDQLAASLGIDGPLNREQALELLENEVLAPA
HEFQGHELGYWQVQTPISLPTPHLTLSPLYQTHTVAPSFRGINGEFTHWREALAPKPPAH
PTLSSSTTRAPGSLQNFVRGKGSYAPFLPGGLQAAAKSEEDEDEDEDEDEDEDEDEEVGW
KTRAPGMKRGAKLDGADDFLAEMLGQQSITAKAKRRQRDGEFASPQLTVSRLGDKDEDID
GIDLEPAHPSDKNIDDLLPVGRLPAPPSSKKQFKAVAKKDWAHVMDVNQKLENFSELVPE
MAKEYPFELDNFQKEAVYRLELGDSVFVAAHTSAGKTVVAEYAIALAAKHMTKAIYTSPI
KALSNQKFRDFKTTFEPSTVGILTGDVQINAEGSCLIMTTEILRSMLYKGADLIRDVEFV
IFDEVHYVNDAERGVVWEEVIIMLPEHVNIILLSATVPNTKEFADWVGRTKKKDIYVIST
PMRPVPLEHFLWAGRETHKIVSSQSKFLMEGYSSASDALRRKQDKEREANGLPPLQRTGG
RGGAPVKSKDLPTGKSAPFTRVGAGRNHTNRGGGNGPPQAAFGGGRGGRGGGRGGFGGSS
RPSHVLDQNIWTHLISYLKKNTLLPVVNFVFSKKRCEDKNLPQILRMRELLGRGIGVHHG
GLLPLVKEVVEILFARGLVKVLFATETFAMGVNMPAKSVVFSGIRKHDGISFRNLLPGEY
TQMAGRAGRRGLDSTGTVIILSGDELPSVEELNEMMLGVPNRLSSQFRLTYNMILNLLRV
EALKVEEMIKRSFSENATQKMAPEQQRVIAQTEKELAKLPKLECDVCNADIDAFYNLSTE
ASRLNAQFLKRASWSNQSGKLFVPGRVVVLRNAHFPGNLAVISGNHPNLGPDGQRPDVKA
FRVLVLVTPGQKSGKEDLSVEELTPRWPPILPKGPFPNPTAERTVVDTSSISFVINHILK
YDFYRLNSRESPSDIQQALNDLSKLHEELSALPELPEADWSRLRDIDIQSLLKERTNAAS
RLSKLGCQLCEDFADHYATLHERKQVEQRIQKLKLQLSDQNLELLPDYESRVEVLKRLSF
IDDNATVLLKGRVACEINSAPELILTELILENILADYTPEEVVALLSIFVFVEKTESQPI
IPTKLQDGLDVIYNIAEQVEREQDSCQVQHDEFATKYKPGLVEVVYEWARGMPFNEITNL
TDVPEGTIVRVITRLDETCREVRDAARVIGDADLFKKMEEAQSLIRRDIVFAASLYL
NT seq 3774 nt   +upstreamnt  +downstreamnt
atggagcaggcgactgatctcgaagattcggtctttctagaactgctcaatactgccgtc
aatccttcttctgtcgatgcgataccgtcagaccagctcgcggcatcattagggatcgat
ggccctttgaacagagagcaagccttggaattattggaaaatgaagttttggctcctgca
catgaatttcaagggcacgaacttggatactggcaagtgcaaacgcccatcagtcttcct
acgccgcacttgaccctttctcctctgtatcagacgcacacagtagccccgtcgttccga
ggtatcaatggggagttcacgcattggcgagaagctcttgctcctaaacccccagcccat
cccaccttgtcttcatctacgaccagagcccctggttctctgcagaatttcgtcagagga
aagggatcatatgctcctttccttcctggtggtttgcaggccgccgctaaatcggaagaa
gatgaggatgaagacgaagatgaagatgaagatgaagatgaagatgaagaagtagggtgg
aaaacaagggcgcctggaatgaaaagaggtgccaagctcgatggagcggatgatttcctt
gctgaaatgctaggtcagcagtcaataactgcaaaggccaagagacgtcaacgagatggc
gaatttgcttcaccacagttgactgtctcaagactaggtgacaaggatgaagatattgat
ggaattgatctcgagcctgctcatccttcagataagaacatcgatgatttattaccagta
ggacgccttcctgctcctccatcttctaagaaacagttcaaggccgtcgcaaagaaggat
tgggcccatgttatggatgtcaatcaaaaactggagaatttcagtgaactggtacctgag
atggcaaaagagtatcctttcgaactcgataacttccaaaaagaagctgtttacagactt
gaactgggagacagtgttttcgttgctgcccatacatctgcaggtaaaacggttgttgct
gaatatgctattgcccttgcagcgaaacatatgaccaaggccatttatacttctcccatc
aaagcactttcgaatcaaaaattccgagacttcaaaaccacgtttgagccttcaactgtt
ggtatcctgacgggtgatgtccaaatcaatgccgaaggaagctgtctgattatgacaacg
gagatcttgagaagcatgttgtacaagggtgctgaccttatccgagatgttgagtttgtc
atcttcgatgaggtccattacgtcaatgatgctgagcgaggcgtagtttgggaagaggtt
attataatgcttccagaacacgtcaacatcatcttgctttctgccaccgtaccaaacacc
aaggagtttgcagactgggttgggcgaaccaagaagaaggacatctatgtcatctctact
cctatgcgacctgtccccctagaacacttcctctgggccggccgagaaacccacaaaatt
gtcagctcgcaatctaagtttcttatggaaggatactcctcagctagcgatgctcttcgg
cgaaaacaggataaagaaagagaagccaatggcttgccacctctacaacgtaccggcggt
cgagggggagcgccagttaaatcgaaggacctgccaaccgggaagagcgcaccctttact
cgtgttggagctggcaggaaccacaccaatcgtggaggtggtaatggcccaccacaagct
gctttcggcggtggacgaggcggacgtggaggcggtcgaggcggatttgggggtagttcg
cgtccttctcacgtgctcgatcaaaatatttggactcatctcatcagctacctcaagaag
aacaccctcttaccggtcgtcaactttgtgtttagtaagaagagatgtgaggacaaaaac
cttcctcagattttgcgtatgcgagaactactgggccgaggtatcggtgttcaccacggt
ggtcttttgccgttagtgaaagaggtggtcgaaatcttgttcgctcgaggccttgtaaag
gtcctctttgccaccgaaacctttgccatgggtgttaatatgcccgcaaaatcggtcgta
ttctctggcattcgtaaacatgatggcatttctttccgcaaccttcttcctggagagtac
actcaaatggccggtcgagccggtcgtcgtggtctcgatagcacgggaactgtcattatt
ctcagcggcgatgagcttcctagtgtcgaagagttaaacgagatgatgcttggtgtgccc
aacaggctctcatcgcagttcagattgacttataacatgattttgaacttgctgagagta
gaggcgctcaaggtggaggagatgattaagagaagtttctcagaaaacgcgacgcaaaaa
atggcaccagagcagcagagggtcatcgctcaaacggagaaagaactcgcgaagcttccc
aagcttgagtgtgatgtttgcaatgccgatattgatgctttctataacctctcaactgaa
gcttcacgactcaacgcgcagttcctcaagagagcttcttggtctaatcaatctgggaag
ctgtttgtcccaggcagagtggtggttttacgcaatgctcatttccctggcaatcttgct
gtaatctcgggtaatcatcctaaccttggacctgacggccagcggcccgatgtaaaggcg
tttagagtccttgtgcttgtaacaccagggcagaagtccggcaaagaagatctttccgta
gaagaattaactcctcgttggccccctatcctcccgaaaggaccattccccaaccccact
gccgaacggacagtggtcgacacttcctctatctccttcgtgattaatcatatcttgaag
tacgacttctatcgcttgaatagtagagaatctccttccgatattcaacaggctttgaat
gacctcagcaaacttcatgaagagctttcagccctgcctgaactgcctgaggccgactgg
tcaagattgagagacatcgatatacagtcgttgcttaaggaaaggacaaatgcggccagt
aggctatcgaaattgggctgtcagctgtgtgaggactttgcggatcattatgccactcta
catgagcgaaagcaggtggagcagcgtattcaaaaactcaaactccaactctcagatcaa
aaccttgaactgcttcctgactatgagtctcgggtcgaagttctcaaacggctctctttc
atcgacgataacgccacagttcttctcaagggacgcgtggcttgtgagatcaactctgca
cccgaactcattcttacggaactcattcttgaaaatattctcgccgattacacacccgaa
gaagttgttgctcttctttcaatcttcgtgttcgtggagaagacggagtctcaacccata
atcccaaccaaactgcaggatggtctagacgtcatttacaacattgcagagcaggtcgaa
agggagcaggactcttgtcaagttcaacacgatgagtttgccaccaagtataaacctggt
ctggtggaagttgtttatgaatgggcaagaggaatgcctttcaacgagatcaccaacttg
acggatgtaccggaaggaacaatcgtgcgagtaattacaaggctggacgagacttgtaga
gaagttagagacgcggcgagagtcatcggcgacgccgatctgtttaagaagatggaggaa
gcgcagagtttgattcgaagagacattgtttttgctgccagtttgtatctctaa

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